Abstract
This work deals with the problem of recognising chemical entities that are able to act as polypharmacological compounds by binding and modulating two different proteins that have been demonstrated to be critical for cancer metastatic potential and aggressivity. In particular, the aim is to develop a method that automatically indicates which of the given compounds are likely to be ‘active’ with respect to the two proteins in question. In medicinal chemistry, an active compound is defined as a ligand that is capable of modulating the e-mail: dieter.kranzlmueller@lrz.de. In this work, on the other hand, we aim to develop a parallel algorithm that is able to provide an exact solution to the problem using classical techniques of isomorphism and similarity between graphs.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Agatonovic-Kustrin, S., Beresford, R.: Basic concepts of artificial neural network (ANN) modeling and its application in pharmaceutical research. J. Pharm. Biomed. Anal. 22(5), 717–727 (2000)
Branco, D., Di Martino, B., Venticinque, S.: A big data analysis and visualization pipeline for green and sustainable mobility. In: Barolli, L., Woungang, I., Enokido, T. (eds.) AINA 2021. LNNS, vol. 227, pp. 701–710. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-75078-7_69
Ehrlich, H.-C., Rarey, M.: Maximum common subgraph isomorphism algorithms and their applications in molecular science: a review. WIREs Comput. Mol. Sci. 1(1), 68–79 (2011)
Han, K., Lakshminarayanan, B., Liu, J.Z.: Reliable graph neural networks for drug discovery under distributional shift. CoRR, abs/2111.12951 (2021)
Jayaraj, P.B., Rahamathulla, K., Gopakumar, G.: A GPU based maximum common subgraph algorithm for drug discovery applications. In: 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), pp. 580–588 (2016)
Jing, Y., Bian, Y., Hu, Z., Wang, L., Xie, X.-Q.S.: Deep learning for drug design: an artificial intelligence paradigm for drug discovery in the big data era. AAPS J. 20(3) (2018). Article number: 58. https://doi.org/10.1208/s12248-018-0210-0
Martinez, I., Montero, J., Pariente, T., Di Martino, B., D’Angelo, S., Esposito, A.: Parallelization and deployment of big data algorithms: the toreador approach. In: 2018 32nd International Conference on Advanced Information Networking and Applications Workshops (WAINA), pp. 408–412. IEEE (2018)
Yinqiu, X., Yao, H., Lin, K.: An overview of neural networks for drug discovery and the inputs used. Expert Opin. Drug Discov. 13(12), 1091–1102 (2018). PMID: 30449189
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this paper
Cite this paper
Branco, D., Di Martino, B., Cosconati, S., Kranzlmueller, D., D’Angelo, S. (2023). Towards a Parallel Graph Approach to Drug Discovery. In: Barolli, L. (eds) Advanced Information Networking and Applications. AINA 2023. Lecture Notes in Networks and Systems, vol 655. Springer, Cham. https://doi.org/10.1007/978-3-031-28694-0_12
Download citation
DOI: https://doi.org/10.1007/978-3-031-28694-0_12
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-28693-3
Online ISBN: 978-3-031-28694-0
eBook Packages: Intelligent Technologies and RoboticsIntelligent Technologies and Robotics (R0)