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MulEA: Multi-type Entity Alignment of Heterogeneous Medical Knowledge Graphs

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Database Systems for Advanced Applications (DASFAA 2023)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 13944))

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Abstract

The large-scale application of medical knowledge graphs has greatly raised the intelligence level of modern medicine. Considering that entity references between multiple medical knowledge graphs can lead to redundancy, knowledge graph alignment tasks are required to identify entity pairs or subgraphs of heterogeneous knowledge graphs pointing to the same elements in the real world. Existing medical knowledge graph alignment methods do not consider the multi-type features of medical entities. To tackle above challenge, we propose a Multi-type Entity Alignment model of medical knowledge graphs based on attention mechanism named MulEA. Firstly, MulEA integrates the multi-type information features of medical entities to align various types of entities jointly through constructing an entity multi-type information embedding matrix for medical knowledge graphs. Secondly, MulEA designs a relationship collective aggregation module to fully utilize the features of different relationships to improve alignment accuracy. Finally, we evaluate the performance of MulEA on a real medical knowledge graph alignment dataset MED-OWN-15K, and it achieves the state-of-the-art performance on several metrics, showing the effectiveness of our method.

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References

  1. Bordes, A., Usunier, N., Garcia-Duran, A., Weston, J., Yakhnenko, O.: Translating embeddings for modeling multi-relational data. Adv. Neural Inf. Process. Syst. 26, 1–9 (2013)

    Google Scholar 

  2. Cao, Y., Liu, Z., Li, C., Li, J., Chua, T.S.: Multi-channel graph neural network for entity alignment. arXiv preprint arXiv:1908.09898 (2019)

  3. Ehrlinger, L., Wöß, W.: Towards a definition of knowledge graphs. SEMANTiCS (Posters, Demos, SuCCESS) 48(1–4), 2 (2016)

    Google Scholar 

  4. Kipf, T.N., Welling, M.: Semi-supervised classification with graph convolutional networks. arXiv preprint arXiv:1609.02907 (2016)

  5. Pei, S., Yu, L., Hoehndorf, R., Zhang, X.: Semi-supervised entity alignment via knowledge graph embedding with awareness of degree difference. In: The World Wide Web Conference, pp. 3130–3136 (2019)

    Google Scholar 

  6. Sun, Z., Hu, W., Li, C.: Cross-lingual entity alignment via joint attribute-preserving embedding. In: d’Amato, C., et al. (eds.) ISWC 2017. LNCS, vol. 10587, pp. 628–644. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-68288-4_37

    Chapter  Google Scholar 

  7. Sun, Z., Hu, W., Zhang, Q., Qu, Y.: Bootstrapping entity alignment with knowledge graph embedding. In: IJCAI, vol. 18, pp. 4396–4402 (2018)

    Google Scholar 

  8. Sun, Z., et al.: Knowledge graph alignment network with gated multi-hop neighborhood aggregation. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 34, pp. 222–229 (2020)

    Google Scholar 

  9. Sun, Z., et al.: A benchmarking study of embedding-based entity alignment for knowledge graphs. arXiv preprint arXiv:2003.07743 (2020)

  10. Veličković, P., Cucurull, G., Casanova, A., Romero, A., Lio, P., Bengio, Y.: Graph attention networks. arXiv preprint arXiv:1710.10903 (2017)

  11. Wang, Z., Lv, Q., Lan, X., Zhang, Y.: Cross-lingual knowledge graph alignment via graph convolutional networks. In: Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, pp. 349–357 (2018)

    Google Scholar 

  12. Wu, Y., Liu, X., Feng, Y., Wang, Z., Yan, R., Zhao, D.: Relation-aware entity alignment for heterogeneous knowledge graphs. arXiv preprint arXiv:1908.08210 (2019)

  13. Wu, Y., Liu, X., Feng, Y., Wang, Z., Zhao, D.: Neighborhood matching network for entity alignment. arXiv preprint arXiv:2005.05607 (2020)

  14. Xu, K., et al.: Cross-lingual knowledge graph alignment via graph matching neural network. arXiv preprint arXiv:1905.11605 (2019)

  15. Zhang, Q., Sun, Z., Hu, W., Chen, M., Guo, L., Qu, Y.: Multi-view knowledge graph embedding for entity alignment. arXiv preprint arXiv:1906.02390 (2019)

  16. Zhang, Z., et al.: An industry evaluation of embedding-based entity alignment. arXiv preprint arXiv:2010.11522 (2020)

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Acknowledgements

This work is partially supported by the National Key Research and Development Plan Project 2022YFC3600901CNKLSTISS, and the Shanghai Science and Technology Development Fund No. 19511121204.

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Correspondence to Yun Xiong .

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Wang, M., Tian, P., Xiong, Y., Yue, J., Zhang, Y., Tang, C. (2023). MulEA: Multi-type Entity Alignment of Heterogeneous Medical Knowledge Graphs. In: Wang, X., et al. Database Systems for Advanced Applications. DASFAA 2023. Lecture Notes in Computer Science, vol 13944. Springer, Cham. https://doi.org/10.1007/978-3-031-30672-3_49

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  • DOI: https://doi.org/10.1007/978-3-031-30672-3_49

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-30671-6

  • Online ISBN: 978-3-031-30672-3

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