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Plant Phenotyping Using DLT Method: Towards Retrieving the Delicate Features in a Dynamic Environment

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Towards Autonomous Robotic Systems (TAROS 2023)

Abstract

Passive phenotyping methodologies use various techniques for calibration, which include a variety of sensory information like vision. Contrary to the state-of-the-art, this paper presents the use of a Direct Linear Transformation (DLT) algorithm to find the shape and position of fine and delicate features in plants. The proposed method not only finds a solution to the motion problem but also provides additional information related to the displacement of the traits of the subject plant. This study uses DLTdv digitalisation toolbox to implement the DLT modelling tool which reduces the complications in data processing. The calibration feature of the toolbox also enables the prior assumption of calibrated space in using DLT.

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References

  1. Agisoft: Agisoft metashape user manual: Standard edition, Agisoft website vol. 1.6, 28 (2021)

    Google Scholar 

  2. Al Khalil, O.: Structure from motion (SFM) photogrammetry as alternative to laser scanning for 3D modelling of historical monuments. Open Sci. J. 5 (2020)

    Google Scholar 

  3. Avidan, S., Shashua, A.: Trajectory triangulation: 3D reconstruction of moving points from a monocular image sequence. IEEE Trans. Pattern Anal. Mach. Intell. 22, 348–357 (2000)

    Article  Google Scholar 

  4. Coppens, F., Wuyts, N., Inzé, D., Dhondt, S.: Unlocking the potential of plant phenotyping data through integration and data-driven approaches. Current Opin. Syst. Biol. 4, 58–63 (2017)

    Article  Google Scholar 

  5. Dandois, J.P., Ellis, E.C.: High spatial resolution three-dimensional mapping of vegetation spectral dynamics using computer vision. Remote Sens. Environ. 136, 259–276 (2013)

    Article  Google Scholar 

  6. Dani, A.P., Kan, Z., Fischer, N.R., Dixon, W.E.: Structure and motion estimation of a moving object using a moving camera. In: Proceedings of the 2010 American Control Conference, pp. 6962–6967. IEEE (2010)

    Google Scholar 

  7. Dhondt, S., Wuyts, N., Inzé, D.: Cell to whole-plant phenotyping: the best is yet to come. Trends Plant Sci. 18, 428–439 (2013)

    Article  Google Scholar 

  8. Faugeras, O., Faugeras, O.A.: Three-Dimensional Computer Vision: A Geometric Viewpoint. MIT Press, Cambridge (1993)

    Google Scholar 

  9. Faugeras, O.D.: What can be seen in three dimensions with an uncalibrated stereo rig? In: Sandini, G. (ed.) ECCV 1992. LNCS, vol. 588, pp. 563–578. Springer, Heidelberg (1992). https://doi.org/10.1007/3-540-55426-2_61

    Chapter  Google Scholar 

  10. Hedrick, T.L.: Software techniques for two-and three-dimensional kinematic measurements of biological and biomimetic systems. Bioinspiration Biomimetics 3 (2008)

    Google Scholar 

  11. Huang, J., Wang, Z., Xue, Q., Gao, J.: Calibration of a camera-projector measurement system and error impact analysis. Measur. Sci. Technol. 23 (2012)

    Google Scholar 

  12. Li, Z., Guo, R., Li, M., Chen, Y., Li, G.: A review of computer vision technologies for plant phenotyping. Comput. Electron. Agric. 176 (2020)

    Google Scholar 

  13. Longuet-Higgins, H.C., Prazdny, K.: The interpretation of a moving retinal image. Proc. Roy. Soc. London Ser. B Biolog. Sci. 208, 385–397 (1980)

    Google Scholar 

  14. Paulus, S.: Measuring crops in 3D: using geometry for plant phenotyping. Plant Methods 15 (2019)

    Google Scholar 

  15. Remondino, F.: Heritage recording and 3D modeling with photogrammetry and 3D scanning. Remote Sens. 3, 1104–1138 (2011)

    Article  Google Scholar 

  16. Saputra, M.R.U., Markham, A., Trigoni, N.: Visual slam and structure from motion in dynamic environments: a survey. ACM Comput. Surv. (CSUR) 51, 1–36 (2018)

    Article  Google Scholar 

  17. Smith, M.W., Carrivick, J.L., Quincey, D.J.: Structure from motion photogrammetry in physical geography. Prog. Phys. Geogr. 40, 247–275 (2016)

    Article  Google Scholar 

  18. Tomlinson, I.: Doubling food production to feed the 9 billion: a critical perspective on a key discourse of food security in the UK. J. Rural. Stud. 29, 81–90 (2013)

    Article  Google Scholar 

  19. Xue, Y., Zhang, S., Zhou, M., Zhu, H.: Novel SfM-DLT method for metro tunnel 3D reconstruction and visualization. Undergr. Space 6, 134–141 (2021)

    Article  Google Scholar 

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Acknowledgements

The authors would like to people the strawberry growing facility at the University of Lincoln for providing help towards collecting the data. This research is fully funded by the Lincoln Agri-Robotics (LAR), University of Lincoln as part of the PhD process of Srikishan Vayakkattil. The research had added support from Research England.

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Correspondence to Srikishan Vayakkattil .

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Vayakkattil, S., Cielniak, G., Calisti, M. (2023). Plant Phenotyping Using DLT Method: Towards Retrieving the Delicate Features in a Dynamic Environment. In: Iida, F., Maiolino, P., Abdulali, A., Wang, M. (eds) Towards Autonomous Robotic Systems. TAROS 2023. Lecture Notes in Computer Science(), vol 14136. Springer, Cham. https://doi.org/10.1007/978-3-031-43360-3_1

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  • DOI: https://doi.org/10.1007/978-3-031-43360-3_1

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  • Online ISBN: 978-3-031-43360-3

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