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TPRO: Text-Prompting-Based Weakly Supervised Histopathology Tissue Segmentation

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Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 (MICCAI 2023)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 14220))

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Abstract

Most existing weakly-supervised segmentation methods rely on class activation maps (CAM) to generate pseudo-labels for training segmentation models. However, CAM has been criticized for highlighting only the most discriminative parts of the object, leading to poor quality of pseudo-labels. Although some recent methods have attempted to extend CAM to cover more areas, the fundamental problem still needs to be solved. We believe this problem is due to the huge gap between image-level labels and pixel-level predictions and that additional information must be introduced to address this issue. Thus, we propose a text-prompting-based weakly supervised segmentation method (TPRO), which uses text to introduce additional information. TPRO employs a vision and label encoder to generate a similarity map for each image, which serves as our localization map. Pathological knowledge is gathered from the internet and embedded as knowledge features, which are used to guide the image features through a knowledge attention module. Additionally, we employ a deep supervision strategy to utilize the network’s shallow information fully. Our approach outperforms other weakly supervised segmentation methods on benchmark datasets LUAD-HistoSeg and BCSS-WSSS datasets, setting a new state of the art. Code is available at: https://github.com/zhangst431/TPRO.

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Notes

  1. 1.

    https://github.com/Kaushalya/medclip.

  2. 2.

    https://drive.google.com/drive/folders/1E3Yei3Or3xJXukHIybZAgochxfn6FJpr.

  3. 3.

    https://drive.google.com/drive/folders/1iS2Z0DsbACqGp7m6VDJbAcgzeXNEFr77.

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Acknowledgment

This work was supported in part by the Natural Science Foundation of Ningbo City, China, under Grant 2021J052, in part by the Ningbo Clinical Research Center for Medical Imaging under Grant 2021L003 (Open Project 2022LYKFZD06), in part by the National Natural Science Foundation of China under Grant 62171377, in part by the Key Technologies Research and Development Program under Grant 2022YFC2009903/2022YFC2009900, in part by the Key Research and Development Program of Shaanxi Province, China, under Grant 2022GY-084, and in part by the Science and Technology Innovation Committee of Shenzhen Municipality, China, under Grants JCYJ20220530161616036.

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Correspondence to Yutong Xie or Yong Xia .

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Zhang, S., Zhang, J., Xie, Y., Xia, Y. (2023). TPRO: Text-Prompting-Based Weakly Supervised Histopathology Tissue Segmentation. In: Greenspan, H., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. MICCAI 2023. Lecture Notes in Computer Science, vol 14220. Springer, Cham. https://doi.org/10.1007/978-3-031-43907-0_11

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  • DOI: https://doi.org/10.1007/978-3-031-43907-0_11

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