Abstract
Large deformation image registration is a challenging task in medical image registration. Iterative registration and pyramid registration are two common CNN-based methods for the task. However, these methods usually consume more parameters and time. Additionally, the existing CNN-based registration methods mainly focus on local feature extraction, limiting their ability to capture the long-distance correlation between image pairs. In this paper, we propose a fast and accurate learning-based algorithm, Pyramid-Iterative Vision Transformer (PIViT), for 3D large deformation medical image registration. Our method constructs a novel pyramid iterative composite structure to solve large deformation problem by using low-scale iterative registration with a Swin Transformer-based long-distance correlation decoder. Furthermore, we exploit pyramid structure to supplement the detailed information of the deformation field by using high-scale feature maps. Comprehensive experimental results implemented on brain MRI and liver CT datasets show that the proposed method is superior to the existing registration methods in terms of registration accuracy, training time and parameters, especially of a significant advantage in running time. Our code is available at https://github.com/Torbjorn1997/PIViT.
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References
Abadi, M., et al.: Tensorflow: a system for large-scale machine learning. In: 12th \(\{\)USENIX\(\}\) Symposium on Operating Systems Design and Implementation (\(\{\)OSDI\(\}\) 16), pp. 265–283 (2016)
Antonelli, M., et al.: The medical segmentation decathlon. arXiv preprint arXiv:2106.05735 (2021)
Balakrishnan, G., Zhao, A., Sabuncu, M.R., Guttag, J., Dalca, A.V.: An unsupervised learning model for deformable medical image registration. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) (2018)
Ballas, N., Yao, L., Pal, C., Courville, A.: Delving deeper into convolutional networks for learning video representations. arXiv preprint arXiv:1511.06432 (2015)
Bellec, P., Chu, C., Chouinard-Decorte, F., Benhajali, Y., Margulies, D.S., Craddock, R.C.: The neuro bureau ADHD-200 preprocessed repository. Neuroimage 144, 275–286 (2017)
Bilic, P., et al.: The liver tumor segmentation benchmark (LITS). arXiv preprint arXiv:1901.04056 (2019)
Chen, J., Frey, E.C., He, Y., Segars, W.P., Li, Y., Du, Y.: TransMorph: transformer for unsupervised medical image registration. Med. Image Anal. 82, 102615 (2022)
Dalca, A.V., Balakrishnan, G., Guttag, J., Sabuncu, M.R.: Unsupervised learning of probabilistic diffeomorphic registration for images and surfaces. Med. Image Anal. 57, 226–236 (2019)
Di Martino, A., et al.: The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism. Mol. Psychiatry 19(6), 659–667 (2014)
Dice, L.R.: Measures of the amount of ecologic association between species. Ecology 26(3), 297–302 (1945)
Dosovitskiy, A., et al.: An image is worth 16x16 words: transformers for image recognition at scale. arXiv preprint arXiv:2010.11929 (2020)
He, Y., et al.: Geometric visual similarity learning in 3D medical image self-supervised pre-training (2023). https://doi.org/10.48550/ARXIV.2303.00874. https://arxiv.org/abs/2303.00874
Heimann, T., et al.: Comparison and evaluation of methods for liver segmentation from CT datasets. IEEE Trans. Med. Imaging 28(8), 1251–1265 (2009)
Hu, X., Kang, M., Huang, W., Scott, M.R., Wiest, R., Reyes, M.: Dual-stream pyramid registration network. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11765, pp. 382–390. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32245-8_43
Jaderberg, M., Simonyan, K., Zisserman, A., et al.: Spatial transformer networks. In: Advances in Neural Information Processing Systems, vol. 28 (2015)
Jia, X., Bartlett, J., Zhang, T., Lu, W., Qiu, Z., Duan, J.: U-Net vs TransFormer: is U-Net outdated in medical image registration? In: Lian, C., Cao, X., Rekik, I., Xu, X., Cui, Z. (eds.) MLMI 2022. LNCS, vol. 13583, pp. 151–160. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-21014-3_16
Jiang, S., Campbell, D., Lu, Y., Li, H., Hartley, R.: Learning to estimate hidden motions with global motion aggregation. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 9772–9781 (2021)
Kingma, D.P., Ba, J.: Adam: a method for stochastic optimization. arXiv preprint arXiv:1412.6980 (2014)
Liu, Z., et al.: Swin transformer: hierarchical vision transformer using shifted windows. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 10012–10022 (2021)
Meng, M., Bi, L., Feng, D., Kim, J.: Non-iterative coarse-to-fine registration based on single-pass deep cumulative learning. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds.) MICCAI 2022. LNCS, vol. 13436, pp. 88–97. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-16446-0_9
Mok, T.C., Chung, A.: Fast symmetric diffeomorphic image registration with convolutional neural networks. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 4644–4653 (2020)
Mok, T.C.W., Chung, A.C.S.: Large deformation diffeomorphic image registration with Laplacian pyramid networks. In: Martel, L., et al. (eds.) MICCAI 2020. LNCS, vol. 12263, pp. 211–221. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59716-0_21
Mok, T.C., Chung, A.: Affine medical image registration with coarse-to-fine vision transformer. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 20835–20844 (2022)
Mueller, S.G., et al.: Ways toward an early diagnosis in Alzheimer’s disease: the Alzheimer’s disease neuroimaging initiative (ADNI). Alzheimer’s Dement. 1(1), 55–66 (2005)
Shattuck, D.W., et al.: Construction of a 3D probabilistic atlas of human cortical structures. Neuroimage 39(3), 1064–1080 (2008)
Shi, J., et al.: XMorpher: full transformer for deformable medical image registration via cross attention. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds.) MICCAI 2022. LNCS, vol. 1346, pp. 217–226. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-16446-0_21
Xu, H., Zhang, J., Cai, J., Rezatofighi, H., Tao, D.: GMFlow: learning optical flow via global matching. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 8121–8130 (2022)
Zhao, S., Dong, Y., Chang, E.I., Xu, Y., et al.: Recursive cascaded networks for unsupervised medical image registration. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 10600–10610 (2019)
Zhao, S., Lau, T., Luo, J., Eric, I., Chang, C., Xu, Y.: Unsupervised 3D end-to-end medical image registration with volume Tweening network. IEEE J. Biomed. Health Inform. 24(5), 1394–1404 (2019)
Zhu, Y., Lu, S.: Swin-VoxelMorph: a symmetric unsupervised learning model for deformable medical image registration using Swin transformer. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds.) Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, vol. 13436, pp. 78–87. Springer, Cham (2022)
Acknowledgments
This work was supported in part by the National Nature Science Foundation of China (62273150), Shanghai Natural Science Foundation (22ZR1421000), Shanghai Municipal Science and Technology Committee of Shanghai Outstanding Academic Leaders Plan (21XD1430600), the Science and Technology Commission of Shanghai Municipality (14DZ2260800).
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Ma, T., Dai, X., Zhang, S., Wen, Y. (2023). PIViT: Large Deformation Image Registration with Pyramid-Iterative Vision Transformer. In: Greenspan, H., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. MICCAI 2023. Lecture Notes in Computer Science, vol 14229. Springer, Cham. https://doi.org/10.1007/978-3-031-43999-5_57
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