Abstract
State-of-the-art deep learning-based registration methods employ three different learning strategies: supervised learning, which requires costly manual annotations, unsupervised learning, which heavily relies on hand-crafted similarity metrics designed by domain experts, or learning from synthetic data, which introduces a domain shift. To overcome the limitations of these strategies, we propose a novel self-supervised learning paradigm for unsupervised registration, relying on self-training. Our idea is based on two key insights. Feature-based differentiable optimizers 1) perform reasonable registration even from random features and 2) stabilize the training of the preceding feature extraction network on noisy labels. Consequently, we propose cyclical self-training, where pseudo labels are initialized as the displacement fields inferred from random features and cyclically updated based on more and more expressive features from the learning feature extractor, yielding a self-reinforcement effect. We evaluate the method for abdomen and lung registration, consistently surpassing metric-based supervision and outperforming diverse state-of-the-art competitors. Source code is available at https://github.com/multimodallearning/reg-cyclical-self-train.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Avants, B.B., Epstein, C.L., Grossman, M., Gee, J.C.: Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal. 12(1), 26–41 (2008)
Balakrishnan, G., Zhao, A., Sabuncu, M.R., Guttag, J., Dalca, A.V.: VoxelMorph: a learning framework for deformable medical image registration. IEEE Trans. Med. Imaging 38(8), 1788–1800 (2019)
Bigalke, A., Hansen, L., Heinrich, M.P.: Adapting the mean teacher for keypoint-based lung registration under geometric domain shifts. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2022: 25th International Conference, Singapore, September 18–22, 2022, Proceedings, Part VI, pp. 280–290. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-16446-0_27
Cao, Y.H., Wu, J.: A random CNN sees objects: one inductive bias of CNN and its applications. In: Proceedings Of The AAAI Conference On Artificial Intelligence. vol. 36, pp. 194–202 (2022)
Castillo, R., et al.: A reference dataset for deformable image registration spatial accuracy evaluation using the copdgene study archive. Phys. Med. Bio. 58(9), 2861 (2013)
Chen, X., He, K.: Exploring simple siamese representation learning. In: Proceedings of the IEEE/CVF conference on computer vision and pattern recognition. pp. 15750–15758 (2021)
Eppenhof, K.A., Pluim, J.P.: Pulmonary CT registration through supervised learning with convolutional neural networks. IEEE Trans. Med. Imaging 38(5), 1097–1105 (2018)
Hang, W., et al.: Local and global structure-aware entropy regularized mean teacher model for 3D left atrium segmentation. In: Martel, A.L., et al. (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part I, pp. 562–571. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59710-8_55
Hansen, L., Heinrich, M.P.: Deep learning based geometric registration for medical images: how accurate can we get without visual features? In: Feragen, A., Sommer, S., Schnabel, J., Nielsen, M. (eds.) Information Processing in Medical Imaging: 27th International Conference, IPMI 2021, Virtual Event, June 28–June 30, 2021, Proceedings, pp. 18–30. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-78191-0_2
Hansen, L., Heinrich, M.P.: Revisiting iterative highly efficient optimisation schemes in medical image registration. In: de Bruijne, M., et al. (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part IV, pp. 203–212. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87202-1_20
Haskins, G., Kruger, U., Yan, P.: Deep learning in medical image registration: a survey. Mach. Vision Appl. 31(1), 1–18 (2020)
Heinrich, M.P.: Closing the gap between deep and conventional image registration using probabilistic dense displacement networks. In: Shen, D., et al. (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2019: 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part VI, pp. 50–58. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32226-7_6
Heinrich, M.P., et al.: Mind: modality independent neighbourhood descriptor for multi-modal deformable registration. Med. Image Anal. 16(7), 1423–1435 (2012)
Heinrich, M.P., Jenkinson, M., Brady, M., Schnabel, J.A.: MRF-based deformable registration and ventilation estimation of lung CT. IEEE Trans. Med. Imaging 32(7), 1239–1248 (2013)
Hering, A., et al.: Learn2reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning. IEEE Trans. Med. Imaging 42, 697–712 (2022)
Hu, Y., et al.: Weakly-supervised convolutional neural networks for multimodal image registration. Med. Image Anal. 49, 1–13 (2018)
Mok, T.C.W., Chung, A.C.S.: Large deformation diffeomorphic image registration with laplacian pyramid networks. In: Martel, A.L., et al. (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part III, pp. 211–221. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59716-0_21
Perone, C.S., Ballester, P., Barros, R.C., Cohen-Adad, J.: Unsupervised domain adaptation for medical imaging segmentation with self-ensembling. NeuroImage 194, 1–11 (2019)
Sarvaiya, J.N., Patnaik, S., Bombaywala, S.: Image registration by template matching using normalized cross-correlation. In: 2009 International Conference on Advances in Computing, Control, and Telecommunication Technologies, pp. 819–822. IEEE (2009)
Siebert, H., Heinrich, M.P.: Learn to fuse input features for large-deformation registration with differentiable convex-discrete optimisation. In: Hering, A., Schnabel, J., Zhang, M., Ferrante, E., Heinrich, M., Rueckert, D. (eds.) Biomedical Image Registration: 10th International Workshop, WBIR 2022, Munich, Germany, July 10–12, 2022, Proceedings, pp. 119–123. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-11203-4_13
Sun, D., Yang, X., Liu, M.Y., Kautz, J.: PWC-Net: CNNs for optical flow using pyramid, warping, and cost volume. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 8934–8943 (2018)
Tarvainen, A., Valpola, H.: Mean teachers are better role models: weight-averaged consistency targets improve semi-supervised deep learning results. Adv. Neural Inf. Process. Syst. 30 (2017)
Wu, W., Wang, Z.Y., Li, Z., Liu, W., Fuxin, L.: PointPWC-Net: cost volume on point clouds for (self-)supervised scene flow estimation. In: Vedaldi, A., Bischof, H., Brox, T., Frahm, J.-M. (eds.) Computer Vision – ECCV 2020: 16th European Conference, Glasgow, UK, August 23–28, 2020, Proceedings, Part V, pp. 88–107. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-58558-7_6
Xie, Q., Luong, M.T., Hovy, E., Le, Q.V.: Self-training with noisy student improves imagenet classification. In: Proceedings of the IEEE/CVF conference on computer vision and pattern recognition. pp. 10687–10698 (2020)
Xu, Z., et al.: Double-uncertainty guided spatial and temporal consistency regularization weighting for learning-based abdominal registration. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2022: 25th International Conference, Singapore, September 18–22, 2022, Proceedings, Part VI, pp. 14–24. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-16446-0_2
Xu, Z., et al.: Evaluation of six registration methods for the human abdomen on clinically acquired CT. IEEE Trans. Biomed. Eng. 63(8), 1563–1572 (2016)
Yan, K., et al.: Sam: self-supervised learning of pixel-wise anatomical embeddings in radiological images. IEEE Trans. Med. Imaging 41(10), 2658–2669 (2022)
Yu, L., Wang, S., Li, X., Fu, C.-W., Heng, P.-A.: Uncertainty-aware self-ensembling model for semi-supervised 3d left atrium segmentation. In: Shen, D., et al. (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2019: 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part II, pp. 605–613. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32245-8_67
Zou, Y., Yu, Z., Kumar, B., Wang, J.: Unsupervised domain adaptation for semantic segmentation via class-balanced self-training. In: Proceedings of the European conference on computer vision (ECCV). pp. 289–305 (2018)
Acknowledgement
We gratefully acknowledge the financial support by the Federal Ministry for Economic Affairs and Climate Action of Germany (FKZ: 01MK20012B) and by the Federal Ministry for Education and Research of Germany (FKZ: 01KL2008).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
1 Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this paper
Cite this paper
Bigalke, A., Hansen, L., Mok, T.C.W., Heinrich, M.P. (2023). Unsupervised 3D Registration Through Optimization-Guided Cyclical Self-training. In: Greenspan, H., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. MICCAI 2023. Lecture Notes in Computer Science, vol 14229. Springer, Cham. https://doi.org/10.1007/978-3-031-43999-5_64
Download citation
DOI: https://doi.org/10.1007/978-3-031-43999-5_64
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-43998-8
Online ISBN: 978-3-031-43999-5
eBook Packages: Computer ScienceComputer Science (R0)