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Graphs in Biomedical Image Analysis, and Overlapped Cell on Tissue Dataset for Histopathology

5th MICCAI Workshop, GRAIL 2023 and 1st MICCAI Challenge, OCELOT 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, September 23, and October 4, 2023, Proceedings

  • Conference proceedings
  • © 2024

Overview

Editors:
  1. Seyed-Ahmad Ahmadi

    1. Nvidia, Munich, Germany

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    You can also search for this editor in PubMed   Google Scholar

  2. Sérgio Pereira

    1. Lunit Inc., Seoul, Korea (Republic of)

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 14373)

Included in the following conference series:

Conference proceedings info: MICCAI 2023.

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Table of contents (16 papers)

  1. Front Matter

    Pages i-xii
    Download chapter PDF

  2. GRAIL 2023

    1. Front Matter

      Pages 1-1
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    2. SCOPE: Structural Continuity Preservation for Retinal Vessel Segmentation

      • Yousef Yeganeh, GöktuÄŸ Güvercin, Rui Xiao, Amr Abuzer, Ehsan Adeli, Azade Farshad et al.
      Pages 3-13

    3. Extended Graph Assessment Metrics for Regression and Weighted Graphs

      • Tamara T. Mueller, Sophie Starck, Leonhard F. Feiner, Kyriaki-Margarita Bintsi, Daniel Rueckert, Georgios Kaissis
      Pages 14-26

    4. Multi-head Graph Convolutional Network for Structural Connectome Classification

      • Anees Kazi, Jocelyn Mora, Bruce Fischl, Adrian V. Dalca, Iman Aganj
      Pages 27-36

    5. Tertiary Lymphoid Structures Generation Through Graph-Based Diffusion

      • Manuel Madeira, Dorina Thanou, Pascal Frossard
      Pages 37-53

    6. Prior-RadGraphFormer: A Prior-Knowledge-Enhanced Transformer for Generating Radiology Graphs from X-Rays

      • Yiheng Xiong, Jingsong Liu, Kamilia Zaripova, Sahand Sharifzadeh, Matthias Keicher, Nassir Navab
      Pages 54-63

    7. A Comparative Study of Population-Graph Construction Methods and Graph Neural Networks for Brain Age Regression

      • Kyriaki-Margarita Bintsi, Tamara T. Mueller, Sophie Starck, Vasileios Baltatzis, Alexander Hammers, Daniel Rueckert
      Pages 64-73

    8. Self Supervised Multi-view Graph Representation Learning in Digital Pathology

      • Vishwesh Ramanathan, Anne L. Martel
      Pages 74-84

    9. Multi-level Graph Representations of Melanoma Whole Slide Images for Identifying Immune Subgroups

      • Lucy Godson, Navid Alemi, Jérémie Nsengimana, Graham P. Cook, Emily L. Clarke, Darren Treanor et al.
      Pages 85-96

    10. Heterogeneous Graphs Model Spatial Relationship Between Biological Entities for Breast Cancer Diagnosis

      • Akhila Krishna, Ravi Kant Gupta, Nikhil Cherian Kurian, Pranav Jeevan, Amit Sethi
      Pages 97-106

  3. OCELOT 2023

    1. Front Matter

      Pages 107-107
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    2. SoftCTM: Cell Detection by Soft Instance Segmentation and Consideration of Cell-Tissue Interaction

      • Lydia Anette Schoenpflug, Viktor Hendrik Koelzer
      Pages 109-122

    3. Detecting Cells in Histopathology Images with a ResNet Ensemble Model

      • Maxime W. Lafarge, Viktor Hendrik Koelzer
      Pages 123-129

    4. Enhancing Cell Detection via FC-HarDNet and Tissue Segmentation: OCELOT 2023 Challenge Approach

      • Yu-Wen Lo, Ching-Hui Yang
      Pages 130-137

    5. Dense Prediction of Cell Centroids Using Tissue Context and Cell Refinement

      • Joshua Millward, Zhen He, Aiden Nibali
      Pages 138-149

    6. Enhancing Cell Detection in Histopathology Images: A ViT-Based U-Net Approach

      • Zhaoyang Li, Wangkai Li, Huayu Mai, Tianzhu Zhang, Zhiwei Xiong
      Pages 150-160

    7. Generating BlobCell Label from Weak Annotations for Precise Cell Segmentation

      • Suk Min Ha, Young Sin Ko, Youngjin Park
      Pages 161-170

  4. Correction to: Generating BlobCell Label from Weak Annotations for Precise Cell Segmentation

    • Suk Min Ha, Young Sin Ko, Youngjin Park
    Pages C1-C1

  5. Back Matter

    Pages 171-172
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Other volumes

  1. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  2. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  3. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  4. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  5. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  6. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  7. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  8. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  9. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  10. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023

  11. Graphs in Biomedical Image Analysis, and Overlapped Cell on Tissue Dataset for Histopathology

  12. Data Augmentation, Labelling, and Imperfections

  13. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 Workshops

  14. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 Workshops

  15. Deep Generative Models

  16. Myopic Maculopathy Analysis

Keywords

About this book

This LNCS conference volume constitutes the proceedings of the MICCAI Workshop GRAIL 2023 and MICCAI Challenge OCELOT 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, September 23, and October 4, 2023. The 9 full papers (GRAIL 2023) and 6 full papers (OCELOT  2023) included in this volume were carefully reviewed and selected from GRAIL 14 (GRAIL 2023) and 6 (OCELOT 2023) submissions.

The conference GRAIL 2023 a wide set of methods and application and OCELOT 2023 focuses on the cover a wide range of methods utilizing tissue information for better cell detection, in the sense of training strategy, model architecture, and especially how to model cell-tissue relationships.

Editors and Affiliations

  • Nvidia, Munich, Germany

    Seyed-Ahmad Ahmadi

  • Lunit Inc., Seoul, Korea (Republic of)

    Sérgio Pereira

Bibliographic Information

  • Book Title: Graphs in Biomedical Image Analysis, and Overlapped Cell on Tissue Dataset for Histopathology

  • Book Subtitle: 5th MICCAI Workshop, GRAIL 2023 and 1st MICCAI Challenge, OCELOT 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, September 23, and October 4, 2023, Proceedings

  • Editors: Seyed-Ahmad Ahmadi, Sérgio Pereira

  • Series Title: Lecture Notes in Computer Science

  • DOI: https://doi.org/10.1007/978-3-031-55088-1

  • Publisher: Springer Cham

  • eBook Packages: Computer Science, Computer Science (R0)

  • Copyright Information: The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Switzerland AG 2024

  • Softcover ISBN: 978-3-031-55087-4Published: 12 March 2024

  • eBook ISBN: 978-3-031-55088-1Published: 11 March 2024

  • Series ISSN: 0302-9743

  • Series E-ISSN: 1611-3349

  • Edition Number: 1

  • Number of Pages: XII, 172

  • Number of Illustrations: 6 b/w illustrations, 45 illustrations in colour

  • Topics: Computer Science, general, Artificial Intelligence, Machine Learning

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