Skip to main content

Generative Plant Growth Simulation from Sequence-Informed Environmental Conditions

  • Conference paper
  • First Online:
Artificial Neural Networks in Pattern Recognition (ANNPR 2024)

Abstract

A plant growth simulation can be characterized as a reconstructed visual representation of a plant or plant system. The phenotypic characteristics and plant structures are controlled by the scene environment and other contextual attributes. Considering the temporal dependencies and compounding effects of various factors on growth trajectories, we formulate a probabilistic approach to the simulation task by solving a frame synthesis and pattern recognition problem. We introduce a sequence-informed plant growth simulation framework (SI-PGS) that employs a conditional generative model to implicitly learn a distribution of possible plant representations within a dynamic scene from a fusion of low-dimensional temporal sensor and context data. Methods such as controlled latent sampling and recurrent output connections are used to improve coherence in the plant structures between frames of prediction. In this work, we demonstrate that SI-PGS is able to capture temporal dependencies and continuously generate realistic frames of plant growth.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Notes

  1. 1.

    Code and supplementary material can be found at:

    https://github.com/mohas95/Sequence-Informed-Plant-Growth-Simulation.

References

  1. Cieslak, M., et al.: L-system models for image-based phenomics: case studies of maize and canola. in Silico Plants 4(1), diab039 (2021). https://doi.org/10.1093/insilicoplants/diab039

    Article  Google Scholar 

  2. Debbagh, M.: Learning structured output representations from attributes using deep conditional generative models. arXiv preprint arXiv:2305.00980 (2023). https://doi.org/10.48550/arXiv.2305.00980

  3. Drees, L., Junker-Frohn, L.V., Kierdorf, J., Roscher, R.: Temporal prediction and evaluation of brassica growth in the field using conditional generative adversarial networks. Comput. Electron. Agric. 190, 106415 (2021). https://doi.org/10.1016/j.compag.2021.106415

    Article  Google Scholar 

  4. Goodfellow, I., et al.: Generative adversarial nets. In: Advances in Neural Information Processing Systems, vol. 27 (2014). https://doi.org/10.48550/arXiv.1406.2661

  5. Heusel, M., Ramsauer, H., Unterthiner, T., Nessler, B., Hochreiter, S.: Gans trained by a two time-scale update rule converge to a local nash equilibrium. In: Advances in Neural Information Processing Systems. NIPS 2017, vol. 30, pp. 6629-6640 (2017). https://doi.org/10.5555/3295222.3295408

  6. Hitti, Y., Buzatu, I., Del Verme, M., Lefsrud, M., Golemo, F., Durand, A.: Growspace: a reinforcement learning environment for plant architecture. Comput. Electron. Agric. 217, 108613 (2024). https://doi.org/10.1016/j.compag.2024.108613

    Article  Google Scholar 

  7. Jiang, Y., Li, C., Paterson, A.H., Sun, S., Xu, R., Robertson, J.: Quantitative analysis of cotton canopy size in field conditions using a consumer-grade RGB-D camera. Front. Plant Sci. 8, 2233 (2018). https://doi.org/10.3389/fpls.2017.02233

    Article  Google Scholar 

  8. Keren, G., Schuller, B.: Convolutional RNN: an enhanced model for extracting features from sequential data. In: 2016 International Joint Conference on Neural Networks (IJCNN), pp. 3412–3419. IEEE (2016). https://doi.org/10.1109/IJCNN.2016.7727636

  9. Kingma, D.P., Welling, M.: Auto-encoding variational bayes. arXiv preprint arXiv:1312.6114 (2013). https://doi.org/10.48550/arXiv.1312.6114

  10. Leonhardt, J., Drees, L., Jung, P., Roscher, R.: Probabilistic biomass estimation with conditional generative adversarial networks. In: Andres, B., Bernard, F., Cremers, D., Frintrop, S., Goldlücke, B., Ihrke, I. (eds.) DAGM GCPR 2022. LNCS, vol. 13485, pp. 479–494. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-16788-1_29

    Chapter  Google Scholar 

  11. Li, Y., et al.: Self-supervised plant phenotyping by combining domain adaptation with 3D plant model simulations: application to wheat leaf counting at seedling stage. Plant Phenomics 5, 0041 (2023). https://doi.org/10.34133/plantphenomics.0041

    Article  Google Scholar 

  12. Lu, Y., Chen, D., Olaniyi, E., Huang, Y.: Generative adversarial networks (GANs) for image augmentation in agriculture: a systematic review. Comput. Electron. Agric. 200, 107208 (2022)

    Article  Google Scholar 

  13. Luo, L., et al.: Eff-3DPSeg: 3D organ-level plant shoot segmentation using annotation-efficient deep learning. Plant Phenomics 5, 0080 (2023). https://doi.org/10.34133/plantphenomics.0080

    Article  Google Scholar 

  14. Miranda, M., Drees, L., Roscher, R.: Controlled multi-modal image generation for plant growth modeling. In: 2022 26th International Conference on Pattern Recognition (ICPR), pp. 5118–5124 (2022). https://doi.org/10.1109/ICPR56361.2022.9956115

  15. Prusinkiewicz, P., Cieslak, M., Ferraro, P., Hanan, J.: Modeling plant development with L-systems. In: Morris, R.J. (ed.) Mathematical Modelling in Plant Biology, pp. 139–169. Springer, Cham (2018). https://doi.org/10.1007/978-3-319-99070-5_8

    Chapter  Google Scholar 

  16. Sakurai., S., Uchiyama., H., Shimada., A., Taniguchi., R.: Plant growth prediction using convolutional LSTM. In: Proceedings of the 14th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (5: VISAPP), pp. 105–113. INSTICC (2019). https://doi.org/10.5220/0007404901050113

  17. Sohn, K., Lee, H., Yan, X.: Learning structured output representation using deep conditional generative models. In: Advances in Neural Information Processing Systems, vol. 28 (2015). https://doi.org/10.5555/2969442.2969628

  18. Soualiou, S., et al.: Functional-structural plant models mission in advancing crop science: opportunities and prospects. Front. Plant Sci. 12, 747142 (2021). https://doi.org/10.3389/fpls.2021.747142

    Article  Google Scholar 

  19. Sun, S., et al.: In-field high throughput phenotyping and cotton plant growth analysis using lidar. Front. Plant Sci. 9 (2018). https://doi.org/10.3389/fpls.2018.00016

  20. Szegedy, C., Vanhoucke, V., Ioffe, S., Shlens, J., Wojna, Z.: Rethinking the inception architecture for computer vision. In: 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 2818–2826 (2016). https://doi.org/10.1109/CVPR.2016.308

  21. Wang, Z., Lu, L., Bovik, A.C.: Video quality assessment based on structural distortion measurement. Signal Process. Image Commun. 19(2), 121–132 (2004). https://doi.org/10.1016/S0923-5965(03)00076-6

    Article  Google Scholar 

  22. Yasrab, R., Zhang, J., Smyth, P., Pound, M.P.: Predicting plant growth from time-series data using deep learning. Remote Sens. 13(3) (2021). https://doi.org/10.3390/rs13030331

Download references

Acknowledgements

This study was partially funded by Gardyn and Mitacs (IT16220). We thank the Gardyn team for providing the vertical growth systems essential for building our datasets. Special thanks to Anita Parmar, Ollivier Dyens, and the Building 21 members for their engagement in creative discussions.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Mohamed Debbagh .

Editor information

Editors and Affiliations

1 Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (mp4 34933 KB)

Supplementary material 2 (mp4 7027 KB)

Rights and permissions

Reprints and permissions

Copyright information

© 2024 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Debbagh, M., Liu, Y., Zheng, Z., Jiang, X., Sun, S., Lefsrud, M. (2024). Generative Plant Growth Simulation from Sequence-Informed Environmental Conditions. In: Suen, C.Y., Krzyzak, A., Ravanelli, M., Trentin, E., Subakan, C., Nobile, N. (eds) Artificial Neural Networks in Pattern Recognition. ANNPR 2024. Lecture Notes in Computer Science(), vol 15154. Springer, Cham. https://doi.org/10.1007/978-3-031-71602-7_26

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-71602-7_26

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-71601-0

  • Online ISBN: 978-3-031-71602-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics