Skip to main content

Beyond Intensity Transforms: Medical Image Synthesis Under Large Deformation

  • Conference paper
  • First Online:
Simulation and Synthesis in Medical Imaging (SASHIMI 2024)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 15187))

Included in the following conference series:

  • 244 Accesses

Abstract

Deep generative models have achieved remarkable performance in various medical image-to-image translation tasks, including image reconstruction, denoising, and multimodal synthesis. However, these models typically learn to change the intensity of an image while preserving structure. In many medical image-to-image translation scenarios, there is often a significant deformation between the source and target images, such as the deformation of the lungs during breathing, adding an additional layer of complexity. Conventional generative models are not suited to capture spatial deformation. To address this, we propose a framework for medical image synthesis under large deformation which consists of two stages: the first stage predicts a dense displacement field to deform the moving image into the fixed image space, and the second stage predicts the intensity changes. We demonstrate our method on inspiratory-expiratory chest computed tomography images from a large cohort of nearly 500 subjects with varying degrees of disease severity. Ablation studies were conducted to understand the contribution of various model components. Our method achieved reliable alignment between the source and target images with a Dice similarity coefficient of 0.90 and a high multiscale structural similarity of 0.863 within the testing cohort.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Bera, S., Biswas, P.K.: Noise conscious training of non local neural network powered by self attentive spectral normalized markovian patch GAN for low dose CT denoising. IEEE Transactions on Medical Imaging 40(12), 3663–3673 (2021)

    Article  Google Scholar 

  2. Cardoso, M.J., Li, W., Brown, R., Ma, N., Kerfoot, E., Wang, Y., Murrey, B., Myronenko, A., Zhao, C., Yang, D., et al.: MONAI: An open-source framework for deep learning in healthcare. arXiv preprint arXiv:2211.02701 (2022)

  3. Chaudhary, M.F., Gerard, S.E., Christensen, G.E., Cooper, C.B., Schroeder, J.D., Hoffman, E.A., Reinhardt, J.M.: LungViT: Ensembling cascade of texture sensitive hierarchical vision transformers for cross-volume chest CT image-to-image translation. IEEE Transactions on Medical Imaging (2024)

    Google Scholar 

  4. Ding, K., Ma, K., Wang, S., Simoncelli, E.P.: Image quality assessment: Unifying structure and texture similarity. IEEE Transactions on Pattern Analysis and Machine Intelligence 44(5), 2567–2581 (2020)

    Google Scholar 

  5. Gerard, S.E., Herrmann, J., Kaczka, D.W., Musch, G., Fernandez-Bustamante, A., Reinhardt, J.M.: Multiresolution convolutional neural networks for fully automated segmentation of acutely injured lungs in multiple species. Medical Image Analysis 60, 101592 (2020)

    Article  Google Scholar 

  6. Hatamizadeh, A., Tang, Y., Nath, V., Yang, D., Myronenko, A., Landman, B., Roth, H.R., Xu, D.: UNETR: Transformers for 3D medical image segmentation. In: Proceedings of the IEEE/CVF winter Conference on Applications of Computer Vision. pp. 574–584 (2022)

    Google Scholar 

  7. Heimann, T., Van Ginneken, B., Styner, M.A., Arzhaeva, Y., Aurich, V., Bauer, C., Beck, A., Becker, C., Beichel, R., Bekes, G., et al.: Comparison and evaluation of methods for liver segmentation from CT datasets. IEEE Transactions on Medical Imaging 28(8), 1251–1265 (2009)

    Article  Google Scholar 

  8. Isola, P., Zhu, J.Y., Zhou, T., Efros, A.A.: Image-to-image translation with conditional adversarial networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. pp. 1125–1134 (2017)

    Google Scholar 

  9. Johnson, P.M., Drangova, M.: Conditional generative adversarial network for 3D rigid-body motion correction in MRI. Magnetic Resonance in Medicine 82(3), 901–910 (2019)

    Article  Google Scholar 

  10. Liu, Y., Comellas, A., Kaczka, D., Motahari, A., Lee, C., Gerke, A., Wilson, J., Salisbury, S., O’Connel-Moore, D., Philibert, R., et al.: An incentive-based program coupled with sildenafil provides enhanced success of smoking cessation associated with an accelerated loss of CT assessed smoking-associated lung density (inflammation) and improved DLCO. In: D76. COPD: Clinical Studies, pp. A7556–A7556. American Thoracic Society (2020)

    Google Scholar 

  11. Mao, X., Li, Q., Xie, H., Lau, R.Y., Wang, Z., Paul Smolley, S.: Least squares generative adversarial networks. In: Proceedings of the IEEE international conference on computer vision. pp. 2794–2802 (2017)

    Google Scholar 

  12. Özbey, M., Dalmaz, O., Dar, S.U., Bedel, H.A., Özturk, Ş., Güngör, A., Çukur, T.: Unsupervised medical image translation with adversarial diffusion models. IEEE Transactions on Medical Imaging (2023)

    Google Scholar 

  13. Regan, E.A., Hokanson, J.E., Murphy, J.R., Make, B., Lynch, D.A., Beaty, T.H., Curran-Everett, D., Silverman, E.K., Crapo, J.D.: Genetic epidemiology of COPD (COPDGene) study design. COPD: Journal of Chronic Obstructive Pulmonary Disease 7(1), 32–43 (2011)

    Google Scholar 

  14. Reinhardt, J.M., Ding, K., Cao, K., Christensen, G.E., Hoffman, E.A., Bodas, S.V.: Registration-based estimates of local lung tissue expansion compared to xenon CT measures of specific ventilation. Medical Image Analysis 12(6), 752–763 (2008)

    Article  Google Scholar 

  15. Sang, Y., Ruan, D.: A conditional registration network for continuous 4D respiratory motion synthesis. Medical Physics (2023)

    Google Scholar 

  16. Shin, H.C., Tenenholtz, N.A., Rogers, J.K., Schwarz, C.G., Senjem, M.L., Gunter, J.L., Andriole, K.P., Michalski, M.: Medical image synthesis for data augmentation and anonymization using generative adversarial networks. In: International Workshop on Simulation and Synthesis in Medical Imaging. pp. 1–11. Springer (2018)

    Google Scholar 

  17. You, S., Lei, B., Wang, S., Chui, C.K., Cheung, A.C., Liu, Y., Gan, M., Wu, G., Shen, Y.: Fine perceptive GANs for brain MR image super-resolution in wavelet domain. IEEE Transactions on Neural Networks and Learning Systems (2022)

    Google Scholar 

Download references

Acknowledgements

The COPDGene study was supported by NIH grants (R01 HL089897 and R01 HL089856).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Muhammad F. A. Chaudhary or Sarah E. Gerard .

Editor information

Editors and Affiliations

1 Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (pdf 119 KB)

Rights and permissions

Reprints and permissions

Copyright information

© 2025 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Chaudhary, M.F.A., Reinhardt, J.M., Gerard, S.E. (2025). Beyond Intensity Transforms: Medical Image Synthesis Under Large Deformation. In: Fernandez, V., Wolterink, J.M., Wiesner, D., Remedios, S., Zuo, L., Casamitjana, A. (eds) Simulation and Synthesis in Medical Imaging. SASHIMI 2024. Lecture Notes in Computer Science, vol 15187. Springer, Cham. https://doi.org/10.1007/978-3-031-73281-2_8

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-73281-2_8

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-73280-5

  • Online ISBN: 978-3-031-73281-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics