Abstract
Deep generative models have achieved remarkable performance in various medical image-to-image translation tasks, including image reconstruction, denoising, and multimodal synthesis. However, these models typically learn to change the intensity of an image while preserving structure. In many medical image-to-image translation scenarios, there is often a significant deformation between the source and target images, such as the deformation of the lungs during breathing, adding an additional layer of complexity. Conventional generative models are not suited to capture spatial deformation. To address this, we propose a framework for medical image synthesis under large deformation which consists of two stages: the first stage predicts a dense displacement field to deform the moving image into the fixed image space, and the second stage predicts the intensity changes. We demonstrate our method on inspiratory-expiratory chest computed tomography images from a large cohort of nearly 500 subjects with varying degrees of disease severity. Ablation studies were conducted to understand the contribution of various model components. Our method achieved reliable alignment between the source and target images with a Dice similarity coefficient of 0.90 and a high multiscale structural similarity of 0.863 within the testing cohort.
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References
Bera, S., Biswas, P.K.: Noise conscious training of non local neural network powered by self attentive spectral normalized markovian patch GAN for low dose CT denoising. IEEE Transactions on Medical Imaging 40(12), 3663–3673 (2021)
Cardoso, M.J., Li, W., Brown, R., Ma, N., Kerfoot, E., Wang, Y., Murrey, B., Myronenko, A., Zhao, C., Yang, D., et al.: MONAI: An open-source framework for deep learning in healthcare. arXiv preprint arXiv:2211.02701 (2022)
Chaudhary, M.F., Gerard, S.E., Christensen, G.E., Cooper, C.B., Schroeder, J.D., Hoffman, E.A., Reinhardt, J.M.: LungViT: Ensembling cascade of texture sensitive hierarchical vision transformers for cross-volume chest CT image-to-image translation. IEEE Transactions on Medical Imaging (2024)
Ding, K., Ma, K., Wang, S., Simoncelli, E.P.: Image quality assessment: Unifying structure and texture similarity. IEEE Transactions on Pattern Analysis and Machine Intelligence 44(5), 2567–2581 (2020)
Gerard, S.E., Herrmann, J., Kaczka, D.W., Musch, G., Fernandez-Bustamante, A., Reinhardt, J.M.: Multiresolution convolutional neural networks for fully automated segmentation of acutely injured lungs in multiple species. Medical Image Analysis 60, 101592 (2020)
Hatamizadeh, A., Tang, Y., Nath, V., Yang, D., Myronenko, A., Landman, B., Roth, H.R., Xu, D.: UNETR: Transformers for 3D medical image segmentation. In: Proceedings of the IEEE/CVF winter Conference on Applications of Computer Vision. pp. 574–584 (2022)
Heimann, T., Van Ginneken, B., Styner, M.A., Arzhaeva, Y., Aurich, V., Bauer, C., Beck, A., Becker, C., Beichel, R., Bekes, G., et al.: Comparison and evaluation of methods for liver segmentation from CT datasets. IEEE Transactions on Medical Imaging 28(8), 1251–1265 (2009)
Isola, P., Zhu, J.Y., Zhou, T., Efros, A.A.: Image-to-image translation with conditional adversarial networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. pp. 1125–1134 (2017)
Johnson, P.M., Drangova, M.: Conditional generative adversarial network for 3D rigid-body motion correction in MRI. Magnetic Resonance in Medicine 82(3), 901–910 (2019)
Liu, Y., Comellas, A., Kaczka, D., Motahari, A., Lee, C., Gerke, A., Wilson, J., Salisbury, S., O’Connel-Moore, D., Philibert, R., et al.: An incentive-based program coupled with sildenafil provides enhanced success of smoking cessation associated with an accelerated loss of CT assessed smoking-associated lung density (inflammation) and improved DLCO. In: D76. COPD: Clinical Studies, pp. A7556–A7556. American Thoracic Society (2020)
Mao, X., Li, Q., Xie, H., Lau, R.Y., Wang, Z., Paul Smolley, S.: Least squares generative adversarial networks. In: Proceedings of the IEEE international conference on computer vision. pp. 2794–2802 (2017)
Özbey, M., Dalmaz, O., Dar, S.U., Bedel, H.A., Özturk, Ş., Güngör, A., Çukur, T.: Unsupervised medical image translation with adversarial diffusion models. IEEE Transactions on Medical Imaging (2023)
Regan, E.A., Hokanson, J.E., Murphy, J.R., Make, B., Lynch, D.A., Beaty, T.H., Curran-Everett, D., Silverman, E.K., Crapo, J.D.: Genetic epidemiology of COPD (COPDGene) study design. COPD: Journal of Chronic Obstructive Pulmonary Disease 7(1), 32–43 (2011)
Reinhardt, J.M., Ding, K., Cao, K., Christensen, G.E., Hoffman, E.A., Bodas, S.V.: Registration-based estimates of local lung tissue expansion compared to xenon CT measures of specific ventilation. Medical Image Analysis 12(6), 752–763 (2008)
Sang, Y., Ruan, D.: A conditional registration network for continuous 4D respiratory motion synthesis. Medical Physics (2023)
Shin, H.C., Tenenholtz, N.A., Rogers, J.K., Schwarz, C.G., Senjem, M.L., Gunter, J.L., Andriole, K.P., Michalski, M.: Medical image synthesis for data augmentation and anonymization using generative adversarial networks. In: International Workshop on Simulation and Synthesis in Medical Imaging. pp. 1–11. Springer (2018)
You, S., Lei, B., Wang, S., Chui, C.K., Cheung, A.C., Liu, Y., Gan, M., Wu, G., Shen, Y.: Fine perceptive GANs for brain MR image super-resolution in wavelet domain. IEEE Transactions on Neural Networks and Learning Systems (2022)
Acknowledgements
The COPDGene study was supported by NIH grants (R01 HL089897 and R01 HL089856).
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Chaudhary, M.F.A., Reinhardt, J.M., Gerard, S.E. (2025). Beyond Intensity Transforms: Medical Image Synthesis Under Large Deformation. In: Fernandez, V., Wolterink, J.M., Wiesner, D., Remedios, S., Zuo, L., Casamitjana, A. (eds) Simulation and Synthesis in Medical Imaging. SASHIMI 2024. Lecture Notes in Computer Science, vol 15187. Springer, Cham. https://doi.org/10.1007/978-3-031-73281-2_8
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