Skip to main content

SymBA: Diffeomorphic Registration Based on Gradient Orientation Alignment and Boundary Proximity of Sparsely Selected Voxels

  • Conference paper
Biomedical Image Registration (WBIR 2014)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 8545))

Included in the following conference series:

Abstract

We propose a novel non-linear registration strategy which seeks an optimal deformation that maps corresponding boundaries of similar orientation. Our approach relies on a local similarity metric based on gradient orientation alignment and distance to the nearest inferred boundary and is evaluated on a reduced set of locations corresponding to inferred boundaries. The deformation model is characterized as the integration of a time-constant velocity field and optimization is performed in coarse to fine multi-level strategy with a gradient ascent technique. Our approach is computational efficient since it relies on a sparse selection of voxels corresponding to detected boundaries, yielding robust and accurate results with reduced processing times. We demonstrate quantitative results in the context of the non-linear registration of inter-patient magnetic resonance brain volumes obtained from a public dataset (CUMC12). Our proposed approach achieves a similar level of accuracy as other state-of-the-art methods but with processing times as short as 1.5 minutes. We also demonstrate preliminary qualitative results in the time-sensitive registration contexts of registering MR brain volumes to intra-operative ultrasound for improved guidance in neurosurgery.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. De Nigris, D., Collins, D.L., Arbel, T.: Fast rigid registration of pre-operative magnetic resonance images to intra-operative ultrasound for neurosurgery based on high confidence gradient orientations. International Journal of Computer Assisted Radiology and Surgery 8(4), 649–661 (2013)

    Article  Google Scholar 

  2. De Nigris, D., Collins, D.L., Arbel, T.: Multi-modal image registration based on gradient orientations of minimal uncertainty. IEEE Transactions on Medical Imaging PP(99), 1 (2012)

    Google Scholar 

  3. Haber, E., Modersitzki, J.: Intensity gradient based registration and fusion of multi-modal images. In: Larsen, R., Nielsen, M., Sporring, J. (eds.) MICCAI 2006. LNCS, vol. 4191, pp. 726–733. Springer, Heidelberg (2006)

    Chapter  Google Scholar 

  4. Mercier, L., Del Maestro, R.F., Petrecca, K., Araujo, D., Haegelen, C., Collins, D.L.: Online database of clinical mr and ultrasound images of brain tumors. Medical Physics 39(6) (2012)

    Google Scholar 

  5. Avants, B., Epstein, C., Grossman, M., Gee, J.: Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain. Medical Image Analysis 12(1), 26–41 (2008)

    Article  Google Scholar 

  6. Battiti, R.: Accelerated backpropagation learning: Two optimization methods. Complex Systems 3(4), 331–342 (1989)

    MATH  Google Scholar 

  7. Klein, A., Andersson, J., Ardekani, B.A., Ashburner, J., Avants, B., Chiang, M.C., Christensen, G.E., Collins, D.L., Gee, J., Hellier, P., et al.: Evaluation of 14 nonlinear deformation algorithms applied to human brain mri registration. Neuroimage 46(3), 786–802 (2009)

    Article  Google Scholar 

  8. Popuri, K., Cobzas, D., Jägersand, M.: A variational formulation for discrete registration. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part III. LNCS, vol. 8151, pp. 187–194. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

  9. Caviness Jr., V.S., Meyer, J., Makris, N., Kennedy, D.N.: Mri-based topographic parcellation of human neocortex: an anatomically specified method with estimate of reliability. Journal of Cognitive Neuroscience 8(6), 566–587 (1996)

    Article  Google Scholar 

  10. Hellier, P., Barillot, C., Memin, E., Perez, P.: Hierarchical estimation of a dense deformation field for 3-d robust registration. IEEE Transactions on Medical Imaging 20(5), 388–402 (2001)

    Article  Google Scholar 

  11. Rohlfing, T.: Image similarity and tissue overlaps as surrogates for image registration accuracy: Widely used but unreliable. IEEE Transactions on Medical Imaging 31(2), 153–163 (2012)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this paper

Cite this paper

De Nigris, D., Collins, D.L., Arbel, T. (2014). SymBA: Diffeomorphic Registration Based on Gradient Orientation Alignment and Boundary Proximity of Sparsely Selected Voxels. In: Ourselin, S., Modat, M. (eds) Biomedical Image Registration. WBIR 2014. Lecture Notes in Computer Science, vol 8545. Springer, Cham. https://doi.org/10.1007/978-3-319-08554-8_3

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-08554-8_3

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-08553-1

  • Online ISBN: 978-3-319-08554-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics