Abstract
The study of cell morphology and cell mobility variation when cells are grown on top of patterned substrates is becoming a very important factor in tissue regeneration.
In this paper we present a novel approach to automatically detect and remove periodic background patterns in brightfield microscopy images. This background removal process is fundamental for the analysis of cell mobility as the periodic background pattern would otherwise lead to erroneous cell analysis. The detection of the background is performed by searching for the periodic background pattern organization through the analysis of keypoints automatically obtained from images. Using this information we are able to both detect and reconstruct the periodic background and finally remove it from the original images.
We tested the proposed approach on microscopy images with different periodic background patterns. The effectiveness of the method was validated both by visual inspection and by the cell tracking results obtained.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Carvalho, A., Pelaez-Vargas, A., Gallego-Perez, D., Grenho, L., Fernandes, M.H., De Azaf, A.H., Ferraza, M.P., Hansford, D.J., Monteiro, F.J.: Micropatterned silica thin films with nanohydroxyapatite micro-aggregates for guided tissue regeneration. Dental Materials 28(12), 11 (2012)
Pelaez-Vargas, A., Gallego-Perez, D., Carvalho, A., Fernandes, M.H., Hansford, D.J., Monteiro, F.J.: Effects of density of anisotropic microstamped silica thin films on guided bone tissue regeneration - in vitro study. Society for Biomaterials 101(5), 762–769 (2013)
Esteves, T., Oliveira, M.J., Quelhas, P.: Cancer cell detection and morphology analysis based on local interest point detectors. In: Sanches, J.M., Micó, L., Cardoso, J.S. (eds.) IbPRIA 2013. LNCS, vol. 7887, pp. 624–631. Springer, Heidelberg (2013)
Esteves, T., Oliveira, M.J., Quelhas, P.: Cancer cell detection and tracking based on local interest point detectors. In: Kamel, M., Campilho, A. (eds.) ICIAR 2013. LNCS, vol. 7950, pp. 434–441. Springer, Heidelberg (2013)
Li, K., Kanade, T.: Cell population tracking and lineage construction using multiple-model dynamics filters and spatiotemporal optimization. Medical Image Analysis 12(5), 546–566 (2008)
Esteves, T., Quelhas, P., Mendona, A.M., Campilho, A.: Gradient convergence filters for cell nuclei detection: a comparison study with a phase based approach. MVAP 23(4), 623–638 (2012)
Vovk, U., Pernus, F., Likar, B.: A review of methods for correction of intensity inhomogeneity in MRI. IEEE Transactions on Medical Imaging 26(3), 405–421 (2007)
Roy, S., Carass, A., Prince, J.L.: Compressed sensing based intensity non-uniformity correction. In: 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 101–104 (March 2011)
Madani, R., Bourquard, A., Unser, M.: Image segmentation with background correction using a multiplicative smoothing-spline model. In: 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), pp. 186–189 (May 2012)
Zheng, Y., Vanderbeek, B., Xiao, R., Daniel, E., Stambolian, D., Maguire, M., O’Brien, J., Gee, J.: Retrospective illumination correction of retinal fundus images from gradient distribution sparsity. In: 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), pp. 972–975 (May 2012)
Andrew, D.C., Zisserman, A., Bramble, S., Compton, D.: An automatic method for the removal of unwanted, non-periodic patterns from forensic images (1998)
Xie, Y., Chen, L., Hofmann, U.G.: Reduction of periodic noise in fourier domain optical coherence tomography images by frequency domain filtering (2012)
Tuceryan, M., Jain, A.K.: Texture analysis (1998)
Lewis, J.P.: Fast template matching. Vision Interface, 120–123 (1995)
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer International Publishing Switzerland
About this paper
Cite this paper
Esteves, T., Carvalho, Â., Monteiro, F.J., Quelhas, P. (2014). Periodic Background Pattern Detection and Removal for Cell Tracking. In: Campilho, A., Kamel, M. (eds) Image Analysis and Recognition. ICIAR 2014. Lecture Notes in Computer Science(), vol 8815. Springer, Cham. https://doi.org/10.1007/978-3-319-11755-3_14
Download citation
DOI: https://doi.org/10.1007/978-3-319-11755-3_14
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-11754-6
Online ISBN: 978-3-319-11755-3
eBook Packages: Computer ScienceComputer Science (R0)