Abstract
We present a novel automatic algorithm for lung tumors segmentation in follow-up CT studies. The inputs are a baseline CT scan and a delineation of the tumors in it; the output is the tumor delineations in the follow-up scan. The algorithm consists of four steps: (1) deformable registration of the baseline and follow-up scans; (2) segmentation of the tumors in the follow-up scan; (3) geometry-based segmentation leaks correction; and (4) tumor boundary regularization. The key advantage of our method is that it automatically builds a patient-specific prior that increases segmentation accuracy and robustness and reduces observer variability. Our experimental results on 80 pairs of CT scans from 40 patients with ground-truth segmentations by a radiologist yield an average overlap error of 14.5 % (std = 5.6), a significant improvement from the 30 % (std = 13.3) result of stand-alone fast marching segmentation.
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References
Tuma, S.R.: Sometimes size does not matter: reevaluating RECIST and tumor response rate endpoints. J. Nat. Cancer Inst. 98, 1272–1274 (2006)
Weizman, L., Ben-Sira, L., Joskowicz, L., Precel, R., Constantini, S., Ben-Bashat, D.: Automatic segmentation and components classification of optic pathway gliomas in MRI. In: Jiang, T., Navab, N., Pluim, J.P., Viergever, M.A. (eds.) MICCAI 2010, Part I. LNCS, vol. 6361, pp. 103–110. Springer, Heidelberg (2010)
Hollensen, C., Cannon, G., Cannon, D., Bentzen, S., Larsen, R.: Lung tumor segmentation using electric flow lines for graph cuts. In: Campilho, A., Kamel, M. (eds.) ICIAR 2012, Part II. LNCS, vol. 7325, pp. 206–213. Springer, Heidelberg (2012)
Reeves, A., Jirapatnakul, A.C.: The VOLCANO’09 MICCAI Challenge: Preliminary results. In: VOLCANO’09, pp. 353–364 (2009)
Kostis, W.J., et al.: Three-dimensional segmentation and growth-rate estimation of small pulmonary nodules in helical CT images. Trans. Med. Imag. 22(10), 1259–1274 (2003)
Jirapatnakul, A.C., et al.: Segmentation of juxtapleural pulmonary nodules using a robust surface estimate. Int. J. Biomed. Imag. 1–14 (2011)
Gribben, H., et al.: MAP-MRF segmentation of lung tumours in PET/CT images. IEEE Int. Symp. Biomed. Imag. 290–293 (2009)
Kanakatte, A., et al.: A pilot study of automatic lung tumor segmentation from Positron Emission Tomography images using standard uptake values. Comp. Intel. Imag. Sig. Proc. 363–368 (2007)
Plajer, I.C., Richter, D.: A new approach to model based active contours in lung tumor segmentation in 3D CT image data. Inf. Tec. App Biomed. 1–4 (2010)
Awad, J., et al.: Three-dimensional lung tumor segmentation from x-ray computed tomography using sparse field active models. Med. Phys. 39(2), 851–865 (2012)
Murphy, K., et al.: Evaluation of registration methods on thoracic CT: The EMPIRE10 Challenge Trans. Med. Imag. 30(11), 1901–1920 (2011)
Song, G., Tustison, N.: Lung CT image registration using diffeomorphic transformation models. Med. Image Anal. Clinic 23–32 (2010)
Kronman, A., Joskowicz, L., Sosna, J.: Anatomical structures segmentation by spherical 3D ray casting and gradient domain editing. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012, Part II. LNCS, vol. 7511, pp. 363–370. Springer, Heidelberg (2012)
Bærentzen, J.A.: On the implementation of fast marching methods for 3D lattices. Math. Model 13, 1–19 (2001)
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Vivanti, R., Karaaslan, O.A., Joskowicz, L., Sosna, J. (2014). Automatic Lung Tumor Segmentation with Leaks Removal in Follow-up CT Studies. In: Linguraru, M., et al. Clinical Image-Based Procedures. Translational Research in Medical Imaging. CLIP 2014. Lecture Notes in Computer Science(), vol 8680. Springer, Cham. https://doi.org/10.1007/978-3-319-13909-8_12
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DOI: https://doi.org/10.1007/978-3-319-13909-8_12
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