Skip to main content

Local Variational Bayesian Inference Using Niche Differential Evolution for Brain Magnetic Resonance Image Segmentation

  • Conference paper
  • First Online:
Intelligence Science and Big Data Engineering. Image and Video Data Engineering (IScIDE 2015)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 9242))

Abstract

Brain magnetic resonance (MR) image segmentation is pivotal for quantitative brain analyses, in which statistical models are most commonly used. However, in spite of its computational effectiveness, these models are less capable of handling the intensity non-uniformity (INU) and partial volume effect (PVE), and hence may produce less accurate results. In this paper, a novel brain MR image segmentation algorithm is proposed. To address the INU and PVE, voxel values in each small volume are characterized by a local variational Bayes (LVB) model, which is inferred by the niche differential evolution (NDE) technique to avoid local optima. A probabilistic brain atlas is constructed for each image to incorporate the anatomical prior into the segmentation process. The proposed NDE-LVB algorithm has been compared to the variational expectation-maximization based and genetic algorithm based segmentation algorithms and the segmentation routine in the widely used statistical parametric mapping package on both synthetic and clinical brain MR images. Our results suggest that the NDE-LVB algorithm can differentiate major brain tissue types more effectively and produce more accurate segmentation results.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Feng, D., Tierney, L., Magnotta, V.: MRI tissue classification using high-resolution Bayesian hidden Markov normal mixture models. J. Am. Stat. Assoc. 107, 102–119 (2012)

    Article  MathSciNet  MATH  Google Scholar 

  2. Ashburner, J., Friston, K.J.: Unified segmentation. NeuroImage 26, 839–851 (2005)

    Article  Google Scholar 

  3. Zexuan, J., Yong, X., Quansen, S., Qiang, C., Deshen, X., Feng, D.D.: Fuzzy local Gaussian mixture model for brain MR image segmentation. IEEE Trans. Inf. Technol. Biomed. 16, 339–347 (2012)

    Article  Google Scholar 

  4. Van Leemput, K., Maes, F., Vandermeulen, D., Suetens, P.: A unifying framework for partial volume segmentation of brain MR images. IEEE Trans. Med. Imaging 22, 105–119 (2003)

    Article  MATH  Google Scholar 

  5. Dimitris, K., Evdokia, X.: Choosing initial values for the EM algorithm for finite mixtures. Comput. Stat. Data Anal. 41, 577–590 (2003)

    Article  MathSciNet  MATH  Google Scholar 

  6. Goldberg, D.E.: Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley Professional, Reading (1989)

    MATH  Google Scholar 

  7. Pernkopf, F., Bouchaffra, D.: Genetic-based EM algorithm for learning Gaussian mixture models. IEEE Trans. Pattern Anal. Mach. Intell. 27, 1344–1348 (2005)

    Article  Google Scholar 

  8. Tohka, J., Krestyannikov, E., Dinov, I.D., Graham, A.M., Shattuck, D.W., Ruotsalainen, U., Toga, A.W.: Genetic algorithms for finite mixture model based voxel classification in neuroimaging. IEEE Trans. Med. Imaging 26, 696–711 (2007)

    Article  Google Scholar 

  9. Li, X., Li, L.H., Lu, H.B., Liang, Z.R.: Partial volume segmentation of brain magnetic resonance images based on maximum a posteriori probability. Med. Phys. 32, 2337–2345 (2005)

    Article  Google Scholar 

  10. Dawant, B.M., Zijdenbos, A.P., Margolin, R.A.: Correction of intensity variations in MR images for computer-aided tissue classification. IEEE Trans. Med. Imaging 12, 770–781 (1993)

    Article  Google Scholar 

  11. Wells III, W.M., Crimson, W.E.L., Kikinis, R., Jolesz, F.A.: Adaptive segmentation of MRI data. IEEE Trans. Med. Imaging 15, 429–442 (1996)

    Article  Google Scholar 

  12. Chunming, L., Rui, H., Zhaohua, D., Gatenby, J.C., Metaxas, D.N., Gore, J.C.: A level set method for image segmentation in the presence of intensity inhomogeneities with application to MRI. IEEE Trans. Image Process. 20, 2007–2016 (2011)

    Article  MathSciNet  Google Scholar 

  13. Wang, L., He, L., Mishra, A., Li, C.: Active contours driven by local Gaussian distribution fitting energy. Sig. Process. 89, 2435–2447 (2009)

    Article  MATH  Google Scholar 

  14. Bishop, C.M.: Pattern Recognition and Machine Learning. Springer, New York (2007)

    MATH  Google Scholar 

  15. Sun, J.Y., Zhang, Q.F., Tsang, E.P.K.: DE/EDA: a new evolutionary algorithm for global optimization. Inf. Sci. 169, 249–262 (2005)

    Article  MathSciNet  Google Scholar 

  16. Bruneau, P., Gelgon, M., Picarougne, F.: Parsimonious reduction of Gaussian mixture models with a variational-Bayes approach. Pattern Recogn. 43, 850–858 (2010)

    Article  MATH  Google Scholar 

  17. Members and collaborators of the Wellcome Trust Centre for Neuroimaging. “Statistical Parametric Mapping (SPM)”. http://www.fil.ion.ucl.ac.uk/spm/

  18. Kwan, R.K.S., Evans, A.C., Pike, G.B.: MRI simulation-based evaluation of image-processing and classification methods. IEEE Trans. Med. Imaging 18, 1085–1097 (1999)

    Article  Google Scholar 

  19. Center for Morphometric Analysis at Massachusetts General Hospital, “The Internet Brain Segmentation Repository (IBSR)”. http://www.cma.mgh.harvard.edu/ibsr/index.html

Download references

Acknowledgments

This work was supported in part by the National Natural Science Foundation of China under Grants 61401209 & 61471297, in part by the Natural Science Foundation Youth Project of Jiangsu Province, China, under Grant BK20140790, in part by China Postdoctoral Science Foundation under Grants 2014T70525 & 2013M531364, in part by the Fundamental Research Funds for the Central Universities under Grants 3102014JSJ0006, and in part by the Returned Overseas Scholar Project of Shaanxi Province, China.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yong Xia .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer International Publishing Switzerland

About this paper

Cite this paper

Li, Z., Ji, Z., Xia, Y. (2015). Local Variational Bayesian Inference Using Niche Differential Evolution for Brain Magnetic Resonance Image Segmentation. In: He, X., et al. Intelligence Science and Big Data Engineering. Image and Video Data Engineering. IScIDE 2015. Lecture Notes in Computer Science(), vol 9242. Springer, Cham. https://doi.org/10.1007/978-3-319-23989-7_60

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-23989-7_60

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-23987-3

  • Online ISBN: 978-3-319-23989-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics