Abstract
The content-based retrieval of diffusion magnetic resonance (dMR) imaging data would enable a wide range of analyses on large databases with dMR images.This paper proposes a content-based retrieval framework for dMR images to explore the use of Diffusion Tensor Imaging (DTI) - derived parameters. The propagation graph algorithm is proposed for the query-centric retrieval of dMR subjects and the fusion of different features. The proposed framework was evaluated with ADNI database with 233 baseline dMR images. The preliminary results show that the proposed retrieval framework is able to retrieve subjects with similar neurodegenerative patterns.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Assaf, Y., Pasternak, O.: Diffusion tensor imaging (DTI)-based white matter mapping in brain research: a review. J. Mol. Neurosci. 34(1), 51–61 (2008)
Basser, P.J.: Inferring microstructural features and the physiological state of tissues from diffusion-weighted images. NMR Biomed. 8(7–8), 333–344 (1995)
Basser, P.J., Pajevic, S., Pierpaoli, C., Duda, J., Aldroubi, A.: In vivo fiber tractography using DT-MRI data. Magn. Reson. Med. 44(4), 625–632 (2000)
Ben Ahmed, O., Benois-Pineau, J., Allard, M., Catheline, G., Ben Amar, C.: Diffusion tensor imaging retrieval for Alzheimer’s disease diagnosis. In: 2014 12th International Workshop on Content-Based Multimedia Indexing (CBMI), pp. 1–6, June 2014
Cai, W., Kim, J., et al.: Content-based medical image retrieval. In: Feng, D. (ed.) Biomedical Information Technology, pp. 83–113. Elsevier, Melbourne (2008)
Che, H., Liu, S., Cai, W., Pujol, S., Kikinis, R., Feng, D.: Co-neighbor multi-view spectral embedding for medical content-based retrieval. In: 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI), pp. 911–914. IEEE (2014)
Fan, Y., Batmanghelich, N., Clark, C.M., Davatzikos, C., Initiative, A.D.N., et al.: Spatial patterns of brain atrophy in MCI patients, identified via high-dimensional pattern classification, predict subsequent cognitive decline. Neuroimage 39(4), 1731–1743 (2008)
Fedorov, A., Beichel, R., Kalpathy-Cramer, J., Finet, J., Fillion-Robin, J.C., Pujol, S., Bauer, C., Jennings, D., Fennessy, F., Sonka, M., et al.: 3D Slicer as an image computing platform for the quantitative imaging network. Magn. Reson. Imaging 30(9), 1323–1341 (2012)
Hanbury, A., Müller, H., Langs, G., Weber, M.A., Menze, B.H., Fernandez, T.S.: Bringing the algorithms to the data: cloud–based benchmarking for medical image analysis. In: Catarci, T., Forner, P., Hiemstra, D., Peñas, A., Santucci, G. (eds.) CLEF 2012. LNCS, vol. 7488, pp. 24–29. Springer, Heidelberg (2012)
Jack, C., Bernstein, M., et al.: Update on the magnetic resonance imaging core of the Alzheimer’s disease neuroimaging initiative. Alzheimer’s Dement. 6(3), 212–220 (2010)
Koay, C.G., Chang, L.C., Carew, J.D., Pierpaoli, C., Basser, P.J.: A unifying theoretical and algorithmic framework for least squares methods of estimation in diffusion tensor imaging. J. Magn. Reson. 182(1), 115–125 (2006)
Liu, S., Cai, W., et al.: Multi-channel brain atrophy pattern analysis in neuroimaging retrieval. In: ISBI, pp. 202–205. IEEE (2013)
Liu, S., Liu, S., et al.: Propagation graph fusion for multi-modal medical content-based retrieval. In: ICARCV, IEEE (2014)
Müller, H., Michoux, N., et al.: A review of content-based image retrieval systems in medical applications clinical benefits and future directions. Int. J. Med. Inf. 73(1), 1–23 (2004)
Tzourio-Mazoyer, N., Landeau, B., Papathanassiou, D., Crivello, F., Etard, O., Delcroix, N., Mazoyer, B., Joliot, M.: Automated anatomical labeling of activations in spm using a macroscopic anatomical parcellation of the mni mri single-subject brain. Neuroimage 15(1), 273–289 (2002)
Westin, C.F., Maier, S.E., Mamata, H., Nabavi, A., Jolesz, F.A., Kikinis, R.: Processing and visualization for diffusion tensor MRI. Med. Image Anal. 6(2), 93–108 (2002)
Yeh, F.C., Tseng, W.Y.I.: Ntu-90: a high angular resolution brain atlas constructed by q-space diffeomorphic reconstruction. NeuroImage 58(1), 91–99 (2011)
Yeh, F.C., Verstynen, T.D., Wang, Y., Fernández-Miranda, J.C., Tseng, W.Y.I.: Deterministic diffusion fiber tracking improved by quantitative anisotropy. PloS One 8(11), e80713 (2013)
Yeh, F.C., Wedeen, V.J., Tseng, W.Y.: Generalized-sampling imaging. IEEE Trans. Med. Imaging 29(9), 1626–1635 (2010)
Zhang, S., Yang, M., Cour, T., Yu, K., Metaxas, D.N.: Query specific fusion for image retrieval. In: Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y., Schmid, C. (eds.) ECCV 2012, Part II. LNCS, vol. 7573, pp. 660–673. Springer, Heidelberg (2012)
Zou, H., Hastie, T.: Regularization and variable selection via the elastic net. J. Roy. Statis. Soc. 67(2), 301–320 (2005). Series B (Statistical Methodology)
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2015 Springer International Publishing Switzerland
About this paper
Cite this paper
Liu, S. et al. (2015). Content-Based Retrieval of Brain Diffusion Magnetic Resonance Image. In: Müller, H., Jimenez del Toro, O., Hanbury, A., Langs, G., Foncubierta Rodriguez, A. (eds) Multimodal Retrieval in the Medical Domain. MRDM 2015. Lecture Notes in Computer Science(), vol 9059. Springer, Cham. https://doi.org/10.1007/978-3-319-24471-6_5
Download citation
DOI: https://doi.org/10.1007/978-3-319-24471-6_5
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-24470-9
Online ISBN: 978-3-319-24471-6
eBook Packages: Computer ScienceComputer Science (R0)