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Proceedings of ECCS 2014 pp 59–68Cite as

Revealing the Relation Between Structure of Chloroplast Genomes and Host Taxonomy

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Abstract

The distribution of chloroplast genomes in 63-dimensional space of triplet frequencies was studied, in connection to the taxonomy correlation to the clusters observed in the distribution. That latter was developed through K-means implementation, for the number of classes varying from 2 to 8. The clade composition of those clusters has been analyzed. Unexpectedly high regularity in clades occupation of different clusters has been found thus proving very high synchrony in evolution of two physically independent genetic entities (chloroplasts vs. nuclear genomes): the proximity in frequency space was determined over the organelle genomes, while the proximity in taxonomy was determined morphologically.

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Notes

  1. 1.

    http://bioinfo-out.curie.fr/projects/vidaexpert/.

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Acknowledgments

This work was partly supported by a research grant No. 14.Y26.31.0004 from the Government of the Russian Federation.

Author information

Authors and Affiliations

  1. Institute of Computational Modelling SB RAS, Krasnoyarsk, Russia

    Michael Sadovsky

  2. Siberian Federal University, Krasnoyarsk, Russia

    Anna Chernyshova

Authors
  1. Michael Sadovsky
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  2. Anna Chernyshova
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Corresponding author

Correspondence to Michael Sadovsky .

Editor information

Editors and Affiliations

  1. RAF, University of Zürich, Zürich, Switzerland

    Stefano Battiston

  2. CREATE-NET, Trento, Italy

    Francesco De Pellegrini

  3. IMT Lucca, Lucca, Italy

    Guido Caldarelli

  4. School of Science and Technology, University of Camerino, Camerino, Italy

    Emanuela Merelli

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Sadovsky, M., Chernyshova, A. (2016). Revealing the Relation Between Structure of Chloroplast Genomes and Host Taxonomy. In: Battiston, S., De Pellegrini, F., Caldarelli, G., Merelli, E. (eds) Proceedings of ECCS 2014. Springer Proceedings in Complexity. Springer, Cham. https://doi.org/10.1007/978-3-319-29228-1_6

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