Abstract
We consider recursive structural assembly using regular d-dimensional simplexes such that a structure at every level is obtained by joining \(d + 1\) structures from a previous level. The resulting structures are similar to the Sierpiński gasket. We use intersection graphs and index sequences to describe these structures. We observe that for each \(d>1\) there are uncountably many isomorphism classes of these structures. Traversal languages that consist of labels of walks that start at a given vertex can be associated with these structures, and we find that these traversal languages capture the isomorphism classes of the structures.
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References
Anderson, J.E., Putnam, I.F.: Topological invariants for substitution tilings and their associated \(C^*\)-algebras Erg. Th. Dyn. Syst. 18(3), 509–537 (1998)
Goodman, R.P., et al.: Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication. Science 310(5754), 166–1665 (2005)
Goodman-Strauss, C.: Matching rules and substitution tilings. Ann. Math. 147, 181–223 (1998)
Goodman-Strauss, C.: Aperiodic hierarchical tilings. In: Sadoc, J.F., Rivier, N. (eds.) Foams and Emulsions. NATO ASI Series: Series E: Applied Sciences, vol. 354, pp. 481–496. Springer, Dordrecht (1999)
Grigorchuk, R., Šunić, Z.: Asymptotic aspects of Schreier graphs and Hanoi Towers groups. Proc. Symposia in Pure Mathematics 77, 183–198 (2008)
Grünbaum, B., Shephard, G.C.: Tilings and Patterns. Freeman, New York (1987)
Han, D., Pal, S., Nangreave, J., Deng, Z., Liu, Y., Yan, H.: DNA origami with complex curvatures in 3-dimensional space. Science 332, 342–346 (2011)
Klavžar, S., Milutinović, U.: Graphs \(S(n, k)\) and a variant of the tower of Hanoi problem. Czechoslovak Math. J. 47(1), 95–104 (1997)
Hinz, A.M., Klavžar, S., Milutinović, U., Petr, C.: The Tower of Hanoi — Myths and Maths. Springer, Basel (2013)
Jolivet, T., Kari, J.: Undecidable properties of self-affine sets and multi-tape automata. In: Csuhaj-Varjú, E., Dietzfelbinger, M., Ésik, Z. (eds.) MFCS 2014, Part I. LNCS, vol. 8634, pp. 352–364. Springer, Heidelberg (2014)
Jonoska, N., Karpenko, D.: Active tile self-assembly, part 2: recursion and self-similarity. Int. J. Found. Comp. Sci. 25(2), 165–194 (2014)
Jonoska, N., Krajcevski, M., McColm, G.: Languages associated with crystallographic symmetry. In: Ibarra, O.H., Kari, L., Kopecki, S. (eds.) UCNC 2014. LNCS, vol. 8553, pp. 216–228. Springer, Heidelberg (2014)
Jonoska, N., Krajcevski, M., McColm, G.: Counter machines and crystallographic structures. Nat. Comput. 15(1), 97–113 (2016)
Liu, D., Wang, M., Deng, Z., Walulu, R., Mao, C.: Tensegrity: construction of rigid DNA triangles with flexible four-arm DNA junctions. J. Am. Chem. Soc. 126(8), 2324–2325 (2004)
Padilla, J.E., Sha, R., Chen, J., Jonoska, N., Seeman, N.C.: A signal-passing DNA-strand-exchange mechanism for active self-assembly of DNA nanostructures. Angew. Chem. Int. Ed. Engl. 54(20), 5939–5942 (2015)
Rothemund, P.W.K.: Folding DNA to create nanoscale shapes and patterns. Nature 440(7082), 297–302 (2006)
Sadun, L.: Personal communication (2016)
Šunić, Z.: Twin towers of Hanoi. Eur. J. Comb. 33(7), 1691–1707 (2012)
Vecchia, G.D., Sanges, C.: A recursively scalable network VLSI implementation. Future Gener. Comput. Syst. 4, 235–243 (1988)
Zhang, F., Jiang, S., Wu, S., Li, Y., Mao, C., Liu, Y., Yan, H.: Complex wireframe DNA origami nanostructures with multi-arm junction vertices. Nature Nanotechnol. 10, 779–784 (2015)
Zhang, W., Oganov, A.R., Goncharov, A.F., Zhu, Q., Boulfelfel, S.E., Lyakhov, A.O., Stavrou, E., Somayazulu, M., Prakapenka, V.B., Konpkov, Z.: Unexpected stable stoichiometries of sodium chlorides. Science 342(6165), 1502–1505 (2013)
Zheng, J., Birktoft, J.J., Chen, Y., Wang, T., Sha, R., Constantinou, P.E., Ginell, S.L., Mao, C., Seeman, N.C.: From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal. Nature 461(7260), 74–77 (2009)
Acknowledgement
We would like to thank Chaim Goodman-Strauss and Lorenzo Sadun for their kind assistance. This work has been supported in part by the NSF grants CCF-1526485 and the NIH grant GM109459.
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Jonoska, N., Krajčevski, M., McColm, G. (2016). Traversal Languages Capturing Isomorphism Classes of Sierpiński Gaskets. In: Amos, M., CONDON, A. (eds) Unconventional Computation and Natural Computation. UCNC 2016. Lecture Notes in Computer Science(), vol 9726. Springer, Cham. https://doi.org/10.1007/978-3-319-41312-9_13
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DOI: https://doi.org/10.1007/978-3-319-41312-9_13
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