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Automatic Rating of Perivascular Spaces in Brain MRI Using Bag of Visual Words

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Image Analysis and Recognition (ICIAR 2016)

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Abstract

Perivascular spaces (PVS), if enlarged and visible in magnetic resonance imaging (MRI), relate to poor cognition, depression in older age, Parkinson’s disease, inflammation, hypertension and cerebral small vessel disease. In this paper we present a fully automatic method to rate the burden of PVS in the basal ganglia (BG) region using structural brain MRI. We used a Support Vector Machine classifier and described the BG following the bag of visual words (BoW) model. The latter was evaluated using a) Scale Invariant Feature Transform (SIFT) descriptors of points extracted from a dense sampling and b) textons, as local descriptors. BoW using SIFT yielded a global accuracy of 82.34 %, whereas using textons it yielded 79.61 %.

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Notes

  1. 1.

    More details about this visual rating scale can be found at http://www.sbirc.ed.ac.uk/documents/epvs-rating-scale-user-guide.pdf.

References

  1. Cai, K., Tain, R., Das, S., Damen, F.C., Sui, Y., Valyi-Nagy, T., et al.: The feasibility of quantitative MRI of perivascular spaces at 7T. J. Neurosci. Meth. 256, 151–156 (2015)

    Article  Google Scholar 

  2. Chen, L., et al.: Identification of cerebral small vessel disease using multiple instancelearning. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 523–530. Springer, New York (2015)

    Chapter  Google Scholar 

  3. Gangeh, M.J., Sørensen, L., Shaker, S.B., Kamel, M.S., de Bruijne, M., Loog, M.: A texton-based approach for the classification of lung parenchyma in CT images. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010, Part III. LNCS, vol. 6363, pp. 595–602. Springer, Heidelberg (2010)

    Chapter  Google Scholar 

  4. Ithapu, V., Singh, V., Lindner, C., Austin, B.P., Hinrichs, C., Carlsson, C.M., Bendlin, B.B., Johnson, S.C.: Extracting and summarizing white matter hyperintensities using supervised segmentation methods in Alzheimer’s disease risk and aging studies. Hum. Brain Mapp. 35(8), 4219–4235 (2014)

    Google Scholar 

  5. Lowe, D.G.: Object recognition from local scale-invariant features. In: The Proceedings of the Seventh IEEE International Conference on Computer Vision, 1999, vol. 2, pp. 1150–1157 (1999)

    Google Scholar 

  6. Lutkenhoff, E.S., Rosenberg, M., Chiang, J., Zhang, K., Pickard, J.D., Owen, A.M., Monti, M.M.: Optimized brain extraction for pathological brains (optiBET). PLoS One 9(12), e115551 (2014)

    Article  Google Scholar 

  7. Potter, G.M., Chappell, F.M., Morris, Z., Wardlaw, J.M.: Cerebral perivascular spaces visible on magnetic resonance imaging: development of a qualitative rating scale and its observer reliability. Cerebrovasc. Dis. 39(3–4), 224–231 (2015)

    Article  Google Scholar 

  8. Potter, G.M., Doubal, F.N., Jackson, C.A., Chappell, F.M., Sudlow, C.L., Dennis, M.S., Wardlaw, J.M.: Enlarged perivascular spaces and cerebral small vessel disease. Int. J. Stroke 10(3), 376–381 (2015)

    Article  Google Scholar 

  9. Ramirez, J., Berezuk, C., McNeely, A.A., Scott, C.J.M., Gao, F., Black, S.E.: Visible Virchow-Robin spaces on magnetic resonance imaging of Alzheimer’s disease patients and normal elderly from the Sunnybrook Dementia Study. J. Alzheimers Dis. 43(2), 415–424 (2015)

    Google Scholar 

  10. Sivic, J., Zisserman, A.: Video google: a text retrieval approach to object matching in videos. In: Proceedings of Ninth IEEE International Conference on Computer Vision, 2003, vol. 2, pp. 1470–1477 (2003)

    Google Scholar 

  11. Staals, J., Makin, S.D.J., Doubal, F.N., Dennis, M.S., Wardlaw, J.M.: Stroke subtype, vascular risk factors, and total MRI brain small-vessel disease burden. Neurology 83(14), 1228–1234 (2014)

    Article  Google Scholar 

  12. Valdés Hernández, M.D.C., Armitage, P.A., Thrippleton, M.J., Chappell, F., Sandeman, E., Muñoz Maniega, S., Shuler, K., Wardlaw, J.M.: Rationale, design and methodology of the image analysis protocol forstudies of patients with cerebral small vessel disease and mild stroke. Brain Behav. 5(12), e00415 (2015)

    Article  Google Scholar 

  13. Valdés Hernández, M.D.C., Piper, R.J., Wang, X., Deary, I.J., Wardlaw, J.M.: Towards the automatic computational assessment of enlargedperivascular spaces on brain magnetic resonance images: a systematic review. J. Magn. Reson. Imaging 38(4), 774–785 (2013)

    Article  Google Scholar 

  14. Vapnik, V.: The Nature of Statistical Learning Theory, 2nd edn. Springer, Heidelberg (1995)

    Book  MATH  Google Scholar 

  15. Wang, X., Valdés Hernández, M.D.C., Doubal, F., Chappell, F.M., Piper, R.J., Deary, I.J., Wardlaw, J.M.: Development and initial evaluation of asemi-automatic approach to assess perivascular spaces on conventionalmagnetic resonance images. J. Neurosci. Meth. 257, 34–44 (2016)

    Article  Google Scholar 

  16. Zhang, Y., Brady, M., Smith, S.: Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm. IEEE Trans. Med. Imaging 20(1), 45–57 (2001)

    Article  Google Scholar 

  17. Zuiderveld, K.: Contrast limited adaptive histogram equalization. In: Paul, S.H. (ed.) Graphics Gems IV, pp. 474–485. Academic Press Professional Inc., London (1994)

    Chapter  Google Scholar 

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Acknowledgements

We would like to thank Dr. Stephen Makin (patient recuitment), study participants, radiographers and staff at the Brain Research Imaging Centre Edinburgh, a SINAPSE (Scottish Imaging Network A Platform for Scientific Excellence) collaboration centre, the Wellcome Trust for funding the primary study that provided the data (Ref. No. 088134/Z/09) and the Row Fogo Charitable Trust (Grants Nos. R35865 and R43412).

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Correspondence to Víctor González-Castro .

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González-Castro, V., Valdés Hernández, M.d.C., Armitage, P.A., Wardlaw, J.M. (2016). Automatic Rating of Perivascular Spaces in Brain MRI Using Bag of Visual Words. In: Campilho, A., Karray, F. (eds) Image Analysis and Recognition. ICIAR 2016. Lecture Notes in Computer Science(), vol 9730. Springer, Cham. https://doi.org/10.1007/978-3-319-41501-7_72

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  • DOI: https://doi.org/10.1007/978-3-319-41501-7_72

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