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An Automatic Neuron Tracing Method Based on Mean Shift and Minimum Spanning Tree

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Brain Informatics and Health (BIH 2016)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 9919))

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Abstract

Digital reconstruction of 3D neuron structures is an important step toward reverse engineering the wiring and functions of a brain. Toward this end, the BigNeuron project bench testing was launched to gather a worldwide community to establish a Big Data resource and a set of the state-of-the-art of single neuron reconstruction algorithms for neuroscience community. As one of the communities, we contribute a Mean shift and Minimum Spanning Tree (M-MST) algorithm to trace single neuron morphology. In our experiment, we have successfully reconstructed 120 Drosophila neurons by using the M-MST algorithm and achieved relatively good difference scores compared with other four algorithms by using APP2 as a reference object.

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Acknowledgements

This work was funded by National Basic Research Program of China (2014CB744600), International Science & Technology Cooperation Program of China (2013DFA32180), National Natural Science Foundation of China (61420106005, 61272345), and JSPS Grants-in-Aid for Scientific Research of Japan (26350994), and supported by Beijing Municipal Commission of Education, and Beijing Xuanwu Hospital.

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Authors and Affiliations

  1. Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi, Japan

    Zhijiang Wan & Ning Zhong

  2. International WIC Institute, Beijing University of Technology, Beijing, China

    Zhijiang Wan, Yishan He, Ming Hao, Jian Yang & Ning Zhong

  3. Beijing Key Laboratory of MRI and Brain Informatics, Beijing, China

    Jian Yang & Ning Zhong

  4. Beijing International Collaboration Base on Brain Informatics and Wisdom Services, Beijing, China

    Jian Yang & Ning Zhong

  5. Beijing Advanced Innovation Center for Future Internet Technology, Beijing, China

    Ning Zhong

Authors
  1. Zhijiang Wan
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  2. Yishan He
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  3. Ming Hao
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  4. Jian Yang
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  5. Ning Zhong
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Corresponding author

Correspondence to Zhijiang Wan .

Editor information

Editors and Affiliations

  1. George Mason University, Fairfax, Virginia, USA

    Giorgio A. Ascoli

  2. Department of Modeling, Analysis and Theory, Allen Institute for Brain Science, Seattle, Washington, USA

    Michael Hawrylycz

  3. University of Nebraska Omaha, Omaha, Nebraska, USA

    Hesham Ali

  4. Information Science and Technology, University of Nebraska Omaha, Omaha, Nebraska, USA

    Deepak Khazanchi

  5. College of Information Sciences and Technology, University of Nebraska Omaha, Omaha, Nebraska, USA

    Yong Shi

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© 2016 Springer International Publishing AG

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Wan, Z., He, Y., Hao, M., Yang, J., Zhong, N. (2016). An Automatic Neuron Tracing Method Based on Mean Shift and Minimum Spanning Tree. In: Ascoli, G., Hawrylycz, M., Ali, H., Khazanchi, D., Shi, Y. (eds) Brain Informatics and Health. BIH 2016. Lecture Notes in Computer Science(), vol 9919. Springer, Cham. https://doi.org/10.1007/978-3-319-47103-7_4

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  • DOI: https://doi.org/10.1007/978-3-319-47103-7_4

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-47102-0

  • Online ISBN: 978-3-319-47103-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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