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Towards Identifying Biological Research Articles in Computer-Aided Biomimetics

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Biomimetic and Biohybrid Systems (Living Machines 2017)

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Abstract

When solving engineering problems through biomimetic design, a lack of knowledge of biology often impedes the translation of biological ideas into engineering principles. Specific challenges are the identification, selection and abstraction of relevant biological information. The use of engineering terminology to search for relevant biological information is hypothesised to contribute to the adventitious character of biomimetics. Alternatively, a holistic approach is proposed where a division is made between the analysis of biological research papers and the decomposition of the engineering problem. The aim of a holisitic approach is to take into account the importance of context during analogical problem solving and provide a theoretical framework for the development of Computer-Aided Biomimetics (CAB) tools. Future work will focus on the development of tools that support engineers during the analysis of biological research papers and modelling of biological systems by providing relevant biological knowledge.

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References

  • Artiga, M.: New perspectives on artifactual and biological functions. Appl. Ontol. 11, 1–9 (2016)

    Article  Google Scholar 

  • Barthlott, W., Neinhuis, C.: Purity of the sacred lotus, or escape from contamination in biological surfaces. Planta 202(1), 1–8 (1997). doi:10.1007/s004250050096

    Article  Google Scholar 

  • Bensaude-Vincent, B.: A cultural perspective on biomimetics. In: Nature, pp. 1–12. InTech (2011). doi:10.5772/10546

  • Bogatyrev, N., Bogatyrev, O.A.: TRIZ-based algorithm for Biomimetic design. Procedia Eng. 131, 377–387 (2015)

    Article  Google Scholar 

  • Brereton, M.: Distributed cognition in engineering design: negotiating between abstract and material representations. In: Goldschmidt, G., Porter, W.L. (eds.) Design representation, pp. 83–103. Springer, London (2004). doi:10.1007/978-1-85233-863-3_4

    Chapter  Google Scholar 

  • Cavallucci, D., Rousselot, F., Zanni, C.: Linking contradictions and laws of engineering system evolution within the triz framework. Creat. Innov. Manage. 18(2), 71–80 (2009). doi:10.1111/j.1467-8691.2009.00515.x

    Article  Google Scholar 

  • Chakrabarti, A.: Supporting analogical transfer in biologically inspired design. In: Goel, A., McAdams, D., Stone, R. (eds.) Biologically Inspired Design, pp. 201–220. Springer, London (2014). doi:10.1007/978-1-4471-5248-4_8

    Chapter  Google Scholar 

  • Chandrasekaran, B., Josephson, J.R.: Function in device representation. Eng. Comput. 16, 162–177 (2000)

    Article  MATH  Google Scholar 

  • Csikszentmihalyi, M.: FLOW: The Psychology of Optimal Experience. HarperCollins, New York (1990)

    Google Scholar 

  • Deldin, J.-M., Schuhknecht, M.: The AskNature database: enabling solutions in biomimetic design. In: Goel, A., McAdams, D., Stone, R. (eds.) Biologically Inspired Design, pp. 17–27. Springer, London (2014). doi:10.1007/978-1-4471-5248-4_3

    Chapter  Google Scholar 

  • Dellieu, L., Sarrazin, M., Simonis, P., Deparis, O., Vigneron, J.P.: A two-in-one superhydrophobic and anti-reflective nanodevice in the grey cicada Cicada orni (Hemiptera). J. Appl. Phys. 116(2), 24701 (2014). doi:10.1063/1.4889849. American Institute of Physics

    Article  Google Scholar 

  • Durand, F., Helms, M., Tsenn, J., McTigue, E., McAdams, D.A., Linsey, J.S.: Teaching students to innovate: evaluating methods for bioinspired design and their impact on design self efficacy. In: 27th International Conference on Design Theory and Methodology, vol. 7 (2015). doi:10.1115/DETC2015-47716

  • Elsevier OA-STM-Corpus: An open access corpus of scientific, technical, and medical content, 11 January 2015. https://github.com/elsevierlabs/OA-STM-Corpus

  • Fayemi, P. E., Maranzana, N., Aoussat, A., Bersano, G.: Bio-inspired design characterisation and its links with problem solving tools. In: Proceedings of DESIGN 2014, pp. 173–182 (2014)

    Google Scholar 

  • Fayemi, P.-E., Maranzana, N., Aoussat, A., Bersano, G.: Assessment of the biomimetic toolset—design spiral methodology analysis. In: Chakrabarti, A. (ed.) ICoRD’15 – Research into Design Across Boundaries Volume 2. Smart Innovation, Systems and Technologies, vol. 35. Springer, New Delhi (2015a). doi:10.1007/978-81-322-2229-3_3

    Google Scholar 

  • Fayemi, P.-E., Maranzana, N., Aoussat, A., Chekchak, T., Bersano, G.: Modeling biological systems to facilitate their selection during a bio-inspired design process. In: DS 80-2 Proceedings of the 20th International Conference on Engineering Design (ICED 2015), Milan, Italy, vol. 2, pp. 225–234 (2015b)

    Google Scholar 

  • Feng, X.Q., Gao, X., Wu, Z., Jiang, L., Zheng, Q.S.: Superior water repellency of water strider legs with hierarchical structures: experiments and analysis. Langmuir 23(9), 4892–4896 (2007). doi:10.1021/la063039b

    Article  Google Scholar 

  • Fish, F.E., Beneski, J.T.: Evolution and bio-inspired design: natural limitations. In: Goel, A.K., McAdams, D.A., Stone, R.B. (eds.) Stone Biologically Inspired Design, Chap. 12, pp. 287–312. Springer, London (2014). doi:10.1007/978-1-4471-5248-4_12

    Chapter  Google Scholar 

  • Garland Jr., T.: Trade-offs. Curr. Biol. 24(2), R60–R61 (2014)

    Article  Google Scholar 

  • Gentner, D., Kurtz, K.J.: Relations, objects, and the composition of analogies. Cogn. Sci. 30(4), 609–642 (2006). doi:10.1207/s15516709cog0000_60

    Article  Google Scholar 

  • Helfman Cohen, Y., Reich, Y.: Biomimetic Design Method for Innovation and Sustainability. Springer, Cham (2016). doi:10.1007/978-3-319-33997-9

    Google Scholar 

  • Helms, M., Vattam, S.S., Goel, A.K.: Biologically inspired design: process and products. Des. Stud. 30(5), 606–622 (2009). doi:10.1016/j.destud.2009.04.003

    Article  Google Scholar 

  • Hirtz, J., Stone, R.B., Mcadams, D.A., Szykman, S., Wood, K.L.: A functional basis for engineering design: reconciling and evolving previous efforts. Res. Eng. Des. 13, 65–82 (2002)

    Article  Google Scholar 

  • Inkermann, D., Stechert, C., Löffler, S., Vietor, T.: A 24. IASTED Technology Conferences/705: ARP/706: RA/707: NANA/728: CompBIO, March 2016. http://doi.org/10.2316/P.2010.706-031

  • Jacbos, S.R., Nichol, E.C., Helms, M.E.: ‘Where are we now and where are we going?’ The BioM innovation database. J. Mech. Des. 136(11), 111101 (2014)

    Article  Google Scholar 

  • Kaiser, M.K., Hashemi Farzaneh, H., Lindemann, U.: An approach to support searching for biomimetic solutions based on system characteristics and its environmental interactions. In: Proceedings of International Design Conference, DESIGN, vol. DS 70, pp. 969–978 (2012)

    Google Scholar 

  • Kaiser, M.K., Hashemi Farzaneh, H., Lindemann, U.: BioSCRABBLE - the role of different types of search terms when searching for biological inspiration in biological research articles. In: International DESIGN Conference, Dubrovnik, Croatia, pp. 241–250 (2014)

    Google Scholar 

  • Khoo, C.S.G., Chan, S., Niu, Y.: Extracting causal knowledge from a medical database using graphical patterns. In: Proceedings of 38th Annual Meeting ofthe Association for Computational Linguistics, pp. 336–343 (2000)

    Google Scholar 

  • Khoo, C.S.G., Kornfit, J., Oddy, R.N., Myaeng, S.H.: Automatic extraction of cause-effect information from newspaper text without knowledge-based inferencing. Literary Linguist. Comput. 13, 177–186 (1998)

    Article  Google Scholar 

  • Kruiper, R., Chen-Burger, J., Desmulliez, M.P.Y.: Computer-aided biomimetics. In: Lepora, Nathan F.F., Mura, A., Mangan, M., Verschure, P.F.M.J., Desmulliez, M., Prescott, T.J. (eds.) Living Machines 2016. LNCS, vol. 9793, pp. 131–143. Springer, Cham (2016). doi:10.1007/978-3-319-42417-0_13

    Chapter  Google Scholar 

  • Lepora, N., Verschure, P., Prescott, T.: The state of the art in biomimetics. Bioinspir. Biomim. 8, 1–11 (2013). doi:10.3905/jpm.1974.408489

    Google Scholar 

  • Markman, A.B., Gentner, D.: Structure mapping in the comparison process. Am. J. Psychol. 113(4), 501–538 (2000). doi:10.2307/1423470

    Article  Google Scholar 

  • Massey, A., Wallace, W.: Understanding and facilitating group problem structuring and formulation: mental representations, interaction, and representation aids. Decis. Support Syst. 17(4), 253–274 (1996)

    Article  Google Scholar 

  • Meyers, A.: Surface allows self-cleaning, 10 December 2015. AskNature: https://asknature.org/strategy/surface-allows-self-cleaning/#.WMlpAm-LSUk

  • Millot, S., Vandewalle, P., Parmentier, E.: Sound production in red-bellied piranhas (Pygocentrus nattereri, Kner): an acoustical, behavioural and morphofunctional study. JEB 214, 3613–3618 (2011). doi:10.1242/jeb.061218

    Article  Google Scholar 

  • Mizoguchi, R., Kitamura, Y., Borgo, S.: A unifying definition for artifact and biological functions. Appl. Ontol. 11(2), 129–154 (2016). doi:10.3233/AO-160165

    Article  Google Scholar 

  • Nagel, J.K.S., Stone, R.B., McAdams, D.A.: A thesaurus for bioinspired engineering design. In: Goel, A., McAdams, D., Stone, R. (eds.) Biologically Inspired Design, Chap. 4, pp. 63–94. Springer, London (2014). doi:10.1007/978-1-4471-5248-4_4

    Chapter  Google Scholar 

  • Neinhuis, C., Barthlott, W.: Characterization and distribution of water-repellent, self-cleaning plant surfaces. Ann. Bot. 79(6), 667–677 (1997). doi:10.1006/anbo.1997.0400

    Article  Google Scholar 

  • Pahl, G., Beitz, W., Feldhusen, J., Grote, K.H.: Engineering Design: A Systematic Approach. Springer, London (2007)

    Book  Google Scholar 

  • Perlman, M.: Changing the mission of theories of teleology: DOs and DON’Ts for thinking about function. In: Functions in Biological and Artificial Worlds, pp. 17–36 (2009)

    Google Scholar 

  • Rugaber, S., Bhati, S., Goswami, V., Spiliopoulou, E., Azad, S., Koushik, S., Kulkarni, R., Kumble, M., Sarathy, S., Goel, A.K.: Knowledge extraction and annotation for cross-domain textual case-based reasoning in biologically inspired design. In: Goel, A., Díaz-Agudo, M., Roth-Berghofer, T. (eds.) Case-Based Reasoning Research and Development (ICCBR). LNCS, vol. 9969. pp. 342–355. Springer, Cham (2016). doi:10.1007/978-3-319-47096-2_23

    Chapter  Google Scholar 

  • Salgueiredo, C.F.: Modeling biological inspiration for innovative design. In: 20th International Product Development Management Conference, Paris, France, June 2013

    Google Scholar 

  • Sartori, J., Pal, U., Chakrabarti, A.: A methodology for supporting “transfer” in biomimetic design. Artif. Intell. Eng. Des. Anal. Manuf. 24(4), 483–506 (2010). doi:10.1017/S0890060410000351

    Article  Google Scholar 

  • Schön, D.A.: The Reflective Practitioner, How Professionals Think in Action. Basic Books, Inc., New York (1983). ISBN: 0-465-06878-2

    Google Scholar 

  • Shu, L.H., Cheong, H.: A natural language approach to biomimetic design. In: Goel, A., McAdams, D., Stone, R. (eds.) Biologically Inspired Design, pp. 29–62. Springer, London (2014). doi:10.1007/978-1-4471-5248-4_3

    Chapter  Google Scholar 

  • Stricker, H.M.: Bionik in der Produktentwicklung unter der Berücksichtigung menschlichen Verhaltens. Ph.D. thesis Lehrstuhl Für Produktentwicklung, TU Munich (2006)

    Google Scholar 

  • Taylor, G.K., Holbrook, R.I., de Perera, T.B.: Fractional rate of change of swim-bladder volume is reliably related to absolute depth during vertical displacements in teleost fish. J. Roy. Soc. Interface 7, 1379–1382 (2010). doi:10.1098/rsif.2009.0522. The Royal Society

    Article  Google Scholar 

  • Vandevenne, D., Verhaegen, P.-A., Dewulf, S. Duflou, J.R.: A scalable approach for the integration of large knowledge repositories in the biologically-inspired design process. In: International Conference on Engineering Design, ICED 2011 (2011)

    Google Scholar 

  • Vandevenne, D., Verhaegen, P.-A., Dewulf, S., Duflou, J.R.: Product and organism aspects for scalable systematic biologically-inspired design. Procedia Eng. 131, 784–791 (2015)

    Article  Google Scholar 

  • Vandevenne, D., Pieters, T., Duflou, J.R.: Enhancing novelty with knowledge-based support for biologically-inspired design. Des. Stud. (2016a). doi:10.1016/j.destud.2016.05.003

  • Vandevenne, D., Verhaegen, P.-A., Dewulf, S., Duflou, J.R.: SEABIRD: scalable search for systematic biologically inspired design. Artif. Intell. Eng. Des. Anal. Manuf. 30, 78–95 (2016b)

    Article  Google Scholar 

  • Vattam, S., Wiltgen, B., Helms, M., Goel, A.K., Yen, J.: DANE: fostering creativity in and through biologically inspired design. In: Taura, T., Nagai, Y. (eds.) Design Creativity 2010, vol. 8, pp. 115–122. Springer, London (2011). doi:10.1007/978-0-85729-224-7_16

    Chapter  Google Scholar 

  • Vattam, S.S., Goel, A.K.: Foraging for inspiration: understanding and supporting the online information seeking practices of biologically inspired designers. In: Proceeding of the ASME IDETC/CIE 2011, 28–31 August 2011

    Google Scholar 

  • Vattam, S.S., Goel, A.K.: An information foraging model of interactive analogical retrieval. In: Proceedings of 35th Annual Meeting of Cognitive Science Society (2013a)

    Google Scholar 

  • Vattam, S.S., Goel, A.K.: Biological solutions for engineering problems: a study in cross-domain textual case-based reasoning. In: Proceedings of 21st International Conference on Case Based Reasoning 2013, pp. 343–357 (2013b). doi:10.1007/978-3-642-39056-2_25

  • Verhaegen, P.A., D’Hondt, J., Vandevenne, D., Dewulf, S., Duflou, J.R.: Identifying candidates for design-by-analogy. Comput. Ind. 62, 446–459 (2011)

    Article  Google Scholar 

  • Vincent, J.F.V., Mann, D.L.: Systematic technology transfer from biology to engineering. Philos. Trans. Ser. A Math. Phys. Eng. Sci. 360(1791), 159–173 (2002). doi:10.1098/rsta.2001.0923

    Article  Google Scholar 

  • Vincent, J.F.V., Bogatyreva, O.A., Bogatyreva, N.R., Bowyer, A., Pahl, A.-K.: Biomimetics: its practice and theory. J. Roy. Soc. Interface 3(9), 471–482 (2006)

    Article  Google Scholar 

  • Vincent, J.F.V.: An ontology of biomimetics. In: Goel, A., McAdams, D., Stone, R. (eds.) Biologically Inspired Design, pp. 269–286. Springer, London (2014). doi:10.1007/978-1-4471-5248-4_11

    Chapter  Google Scholar 

  • Vincent, J.F.V.: The trade-off: a central concept for biomimetics. Bioinspired, Biomimetic and Nanobiomaterials, (2016). doi:10.1680/jbibn.16.00005

    Google Scholar 

  • Wanieck, K., Fayemi, P.-E., Maranzana, N., Zollfrank, C., Jacobs, S.: Biomimetics and its tools. Bioinspir. Biom. Nanobiomater. (2017). doi:10.1680/jbibn.16.00010

    Google Scholar 

  • Wendrich, R.E.: Multimodal interaction, collaboration, and synthesis in design and engineering processing. In: Proceedings of International Design Conference, DESIGN, vol. DS 70, pp. 579–588 (2012)

    Google Scholar 

  • Wendrich, R.E., Kruiper, R.: Keep it real: on tools, emotion, cognition and intentionality in design. In: Proceedings of International Design Conference, DESIGN, Dubrovnik, Croatia, 16–19 May 2016

    Google Scholar 

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Acknowledgements

The authors are grateful to Dr. Ing. Robert E. Wendrich and Dr. Rupert Soar for their advice. This PhD research is funded by the EPSRC Centre for Doctoral Training in Embedded Intelligence and the School of Mathematical and Computer Sciences at Heriot-Watt University, Edinburgh, Scotland, UK.

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Correspondence to Ruben Kruiper .

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Kruiper, R., Vincent, J.F.V., Chen-Burger, J., Desmulliez, M.P.Y. (2017). Towards Identifying Biological Research Articles in Computer-Aided Biomimetics. In: Mangan, M., Cutkosky, M., Mura, A., Verschure, P., Prescott, T., Lepora, N. (eds) Biomimetic and Biohybrid Systems. Living Machines 2017. Lecture Notes in Computer Science(), vol 10384. Springer, Cham. https://doi.org/10.1007/978-3-319-63537-8_21

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