Abstract
Accurate ventricle segmentation is important for reliable automated infarct localization, detection of early ischemic changes, and localization of hemorrhages. The purpose of this study was to develop a robust and accurate ventricle segmentation method in image data of ischemic and hemorrhagic stroke patients. Early follow-up non-contrast CT image data of 35 patients with a clinical diagnosis of ischemic stroke or subarachnoid hemorrhage were collected. We proposed a ventricle segmentation method based on a combination of active contours and an atlas-based segmentation. Ground truth was obtained by manual delineation of the ventricles by 4 observers with corrections by 2 experienced radiologists. Accuracy of the automated method was evaluated by calculation of the intraclass correlation coefficients, Dice coefficients, and by Bland-Altman analysis. The intraclass correlation coefficient for the automated method compared with the reference standard was excellent (0.93). The Dice coefficients was 0.79 [IQR: 0.72–0.84]. Bland-Altman analysis showed a mean difference of 2 mL between the automatic and manual measurements, with broad limits of agreement ranging from −18 to 15 mL. The automated ventricle segmentation showed an excellent correlation and high accuracy compared to the manual reference measurement. This approach is suitable for reliable ventricle segmentation even in stroke patients with a severely deformed brain.
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References
Towfighi, A., Saver, J.L.: Stroke declines from third to fourth leading cause of death in the United States: historical perspective and challenges ahead. Stroke 42, 2351–2355 (2011). doi:10.1161/STROKEAHA.111.621904
Boers, A.M., Marquering, H.A., Jochem, J.J., et al.: Automated cerebral infarct volume measurement in follow-up noncontrast CT scans of patients with acute ischemic stroke. Am. J Neuroradiol. 34, 1522–1527 (2013). doi:10.3174/ajnr.A3463
Boers, A.M., Zijlstra, I.A., Gathier, C.S., et al.: Automatic quantification of subarachnoid hemorrhage on noncontrast CT. Am. J. Neuroradiol. 35, 2279–2286 (2014). doi:10.3174/ajnr.A4042
Stoel, B.C., Marquering, H.A., Staring, M., et al.: Automated brain CT densitometry of early ischemic changes in acute stroke. AJNR Am. J. Neuroradiol. (2013). doi:10.1117/1.JMI.2.1.014004
Schnack, H.G., Hulshoff Pol, H.E., Baaré, W.F.C., et al.: Automatic segmentation of the ventricular system from MR images of the human brain. Neuroimage 14, 95–104 (2001). doi:10.1006/nimg.2001.080
Xia, Y., Hu, Q., Aziz, A., Nowinski, W.L.: A knowledge-driven algorithm for a rapid and automatic extraction of the human cerebral ventricular system from MR neuroimages. Neuroimage 21, 269–282 (2004). doi:10.1016/j.neuroimage.2003.09.029
Schönmeyer, R., Prvulovic, D., Rotarska-Jagiela, A., et al.: Automated segmentation of lateral ventricles from human and primate magnetic resonance images using cognition network technology. Magn. Reson. Imaging 24, 1377–1387 (2006). doi:10.1016/j.mri.2006.08.013
Chen, W., Smith, R., Ji, S.-Y., et al.: Automated ventricular systems segmentation in brain CT images by combining low-level segmentation and high-level template matching. BMC Med. Inform. Decis. Mak. 9, S4 (2009). doi:10.1186/1472-6947-9-S1-S4
Fan, Y., Jiang, T., Evans, D.J.: Volumetric segmentation of brain images using parallel genetic algorithms. IEEE Trans. Med. Imaging 21, 904–909 (2002). doi:10.1109/TMI.2002.803126
Liu, J., Huang, S., Ihar, V., et al.: Automatic model-guided segmentation of the human brain ventricular system from CT images. Acad. Radiol. 17, 718–726 (2010). doi:10.1016/j.acra.2010.02.013
Etyngier, P., Ségonne, F., Keriven, R.: Active-contour-based image segmentation using machine learning techniques. In: Ayache, N., Ourselin, S., Maeder, A. (eds.) MICCAI 2007. LNCS, vol. 4791, pp. 891–899. Springer, Heidelberg (2007). doi:10.1007/978-3-540-75757-3_108
Poh, L.E., Gupta, V., Johnson, A., et al.: Automatic segmentation of ventricular cerebrospinal fluid from ischemic stroke CT images. Neuroinformatics 10, 159–172 (2012). doi:10.1007/s12021-011-9135-9
Qian, X., Lin, Y., Zhao, Y., et al.: Objective ventricle segmentation in brain CT with ischemic stroke based on anatomical knowledge. Biomed. Res. Int. 2017, 1–11 (2017). doi:10.1155/2017/8690892
Berkhemer, O., Fransen, P., Beumer, D., et al.: A randomized trial of intraarterial treatment for acute ischemic stroke. New. Engl. J. Med. 372, 11–20 (2014). doi:10.1056/NEJMoa1411587
Lankton, S., Tannenbaum, A.: Localizing region-based active contours. IEEE Trans. Image Process. 17, 2029–2039 (2008). doi:10.1109/TIP.2008.2004611
Klein, S., Staring, M., Murphy, K., et al.: Elastix: a toolbox for intensity-based medical image registration. IEEE Trans. Med. Imaging 29, 196–205 (2010)
Shamonin, D.P., Bron, E.E., Lelieveldt, B.P.F., et al.: Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer’s disease. Front. Neuroinform. 7, 50 (2013)
Pang, J.: Localized Active Contour (2014). http://uk.mathworks.com/matlabcentral/fileexchange/44906-localized-active-contour
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Ferdian, E. et al. (2017). Automated Ventricular System Segmentation in CT Images of Deformed Brains Due to Ischemic and Subarachnoid Hemorrhagic Stroke. In: Cardoso, M., et al. Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment. RAMBO CMMI SWITCH 2017 2017 2017. Lecture Notes in Computer Science(), vol 10555. Springer, Cham. https://doi.org/10.1007/978-3-319-67564-0_15
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