Abstract
The Sorting by Strip Moves problem, SBSM, was introduced in [6] as a variant of the well-known Sorting by Transpositions problem. A restriction called Block Sorting was shown in [2] to be NP-hard. In this article, we improve upon the ideas used in [6] to obtain a combinatorial characterization of the optimal solutions of SBSM. Using this, we show that a strip move which results in a permutation of two or three fewer strips or which exchanges a pair of adjacent strips to merge them into a single strip necessarily reduces the strip move distance. We also establish that the strip move diameter for permutations of size n is nā1. Further, we exhibit an optimum-preserving equivalence between SBSM and the Common Substring Removals problem (CSR) ā a natural combinatorial puzzle. As a consequence, we show that sorting a permutation via strip moves is as hard (or as easy) as sorting its inverse.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Similar content being viewed by others
References
Bafna, V., Pevzner, P.: Sorting by transpositions. SIAM Journal on Discrete Mathematics 11(2), 224ā240 (1998)
Bein, W.W., Larmore, L.L., Latifi, S., Sudborough, I.H.: Block sorting is hard. International Journal of Foundations of Computer Science 14(3), 425ā437 (2003)
Christie, D.A.: Genome Rearrangement Problems. PhD thesis, Univ. of Glasgow (1999)
Hartman, T.: A simpler 1.5 approximation algorithm for sorting by transpositions. In: Baeza-Yates, R., ChĆ”vez, E., Crochemore, M. (eds.) CPM 2003. LNCS, vol. 2676, pp. 156ā169. Springer, Heidelberg (2003)
Kececioglu, J., Sankoff, D.: Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement. Algorithmica 13, 180ā210 (1995)
Mahajan, M., Rama, R., Raman, V., Vijayakumar, S.: Merging and sorting by strip moves. In: Pandya, P.K., Radhakrishnan, J. (eds.) FSTTCS 2003. LNCS, vol. 2914, pp. 314ā325. Springer, Heidelberg (2003)
Pevzner, P.: Computational Molecular Biology: An Algorithmic Approach. MIT Press, Cambridge (2000)
Vijayakumar, S.: Sorting with Transpositions. PhD thesis, Indian Institute of Technology, Madras (April 2004)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
Ā© 2004 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Mahajan, M., Rama, R., Vijayakumar, S. (2004). Towards Constructing Optimal Strip Move Sequences. In: Chwa, KY., Munro, J.I.J. (eds) Computing and Combinatorics. COCOON 2004. Lecture Notes in Computer Science, vol 3106. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-27798-9_6
Download citation
DOI: https://doi.org/10.1007/978-3-540-27798-9_6
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-22856-1
Online ISBN: 978-3-540-27798-9
eBook Packages: Springer Book Archive