Skip to main content

A Constrained Variational Principle for Direct Estimation and Smoothing of the Diffusion Tensor Field from DWI

  • Conference paper
Information Processing in Medical Imaging (IPMI 2003)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 2732))

Abstract

In this paper, we present a novel constrained variational principle for simultaneous smoothing and estimation of the diffusion tensor field from diffusion weighted imaging (DWI). The constrained variational principle involves the minimization of a regularization term in an L p norm, subject to a nonlinear inequality constraint on the data. The data term we employ is the original Stejskal-Tanner equation instead of the linearized version usually employed in literature. The original nonlinear form leads to a more accurate (when compared to the linearized form) estimated tensor field. The inequality constraint requires that the nonlinear least squares data term be bounded from above by a possibly known tolerance factor. Finally, in order to accommodate the positive definite constraint on the diffusion tensor, it is expressed in terms of cholesky factors and estimated. variational principle is solved using the augmented Lagrangian technique in conjunction with the limited memory quasi-Newton method. Both synthetic and real data experiments are shown to depict the performance of the tensor field estimation algorithm. Fiber tracts in a rat brain are then mapped using a particle system based visualization technique.

This research was supported in part by the NIH grant NS42075.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Alvarez, L., Lions, P.L., Morel, J.M.: Image selective smoothing and edge detection by nonlinear diffusion. ii. SIAM J. Numer. Anal. 29(3), 845–866 (1992)

    Article  MATH  MathSciNet  Google Scholar 

  2. Basser, P.J., Mattiello, J., Lebihan, D.: Estimation of the Effective Self-Diffusion Tensor from the NMR Spin Echo. J. Magn. Reson., series B 103, 247–254 (1994)

    Article  Google Scholar 

  3. Basser, P.J., Pierpaoli, C.: Microstructural and Physiological Features of Tissue Elucidated by Quantitative-Diffusion-Tensor MRI. J. Magn. Reson., series B 111, 209–219 (1996)

    Article  Google Scholar 

  4. Blomgren, P., Chan, T.F., Mulet, P.: Extensions to Total Variation Denoising. Tech. Rep.97–42, UCLA (September 1997)

    Google Scholar 

  5. Chefd’hotel, C., Tschumperle’, D., Deriche, R., Faugeras, O.D.: Constrained flows of matrix-valued functions: Application to diffusion tensor regularization. In: Heyden, A., Sparr, G., Nielsen, M., Johansen, P. (eds.) ECCV 2002. LNCS, vol. 2350, pp. 251–265. Springer, Heidelberg (2002)

    Chapter  Google Scholar 

  6. Caselles, V., Morel, J.M., Sapiro, G., Tannenbaum, A.: IEEE TIP, special issue on PDEs and geometry-driven diffusion in image processing and analysis 7(3) (1998)

    Google Scholar 

  7. Chan, T.F., Golub, G., Mulet, P.: A nonlinear primal-dual method for TV-based image restoration. In: Berger, M., et al. (eds.) Proc. 12th Int. Conf. Analysis and Optimization of Systems: Images, Wavelets, and PDE’s, Paris, France, June 26–28, vol. (219), pp. 241–252 (1996)

    Google Scholar 

  8. Conturo, T.E., Lori, N.F., Cull, T.S., Akbudak, E., Snyder, A.Z., Shimony, J.S., McKinstry, R.C., Burton, H., Raichle, M.E.: Tracking neuronal fiber pathways in the living human brain. Proc. Natl. Acad. Sci. USA 96, 10422–10427 (1999)

    Article  Google Scholar 

  9. Coulon, O., Alexander, D.C., Arridge, S.R.: A Regularization Scheme for Diffusion Tensor Magnetic Resonance Images. In: Insana, M.F., Leahy, R.M. (eds.) IPMI 2001. LNCS, vol. 2082, pp. 92–105. Springer, Heidelberg (2001)

    Chapter  Google Scholar 

  10. Evans, L.C.: Partial Differential Equations. Graduate Studies in Mathematics. American Mathematical Society, Providence (1997)

    MATH  Google Scholar 

  11. Jones, D.K., Simmons, A., Williams, S.C.R., Horsfield, M.A.: Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI. Magn. Reson. Med. 42, 37–41 (1999)

    Article  Google Scholar 

  12. Kimmel, R., Malladi, R., Sochen, N.A.: Images as Embedded Maps and Minimal Surfaces: Movies, Color, Texture, and Volumetric Medical Images. IJCV 39(2), 111–129 (2000)

    Article  MATH  Google Scholar 

  13. Lindgren, B.W.: Statistical Theory. Chapman & Hall/CRC (1993)

    Google Scholar 

  14. Nocedal, J., Wright, S.J.: Num. Optimization. Springer, Heidelberg (2000)

    Google Scholar 

  15. Pang, A., Smith, K.: Spray Rendering: Visualization Using Smart Particles. In: IEEE Visualization 1993 Conference Proceedings, pp. 283–290 (1993)

    Google Scholar 

  16. Parker, G.J.M., Schnabel, J.A., Symms, M.R., Werring, D.J., Baker, G.J.: Nonlinear smoothing for reduction of systematic and random errors in diffusion tensor imaging. Magn. Reson. Imag. 11, 702–710 (2000)

    Article  Google Scholar 

  17. Perona, P., Malik, J.: Scale-space and edge detection using anisotropic diffusion. IEEE TPAMI 12(7), 629–639 (1990)

    Google Scholar 

  18. Perona, P.: Orientation diffusions. IEEE TIP 7(3), 457–467 (1998)

    Google Scholar 

  19. Poupon, C., Mangin, J.F., Clark, C.A., Frouin, V., Regis, J., Le Bihan, D., Block, I.: Towards inference of human brain connectivity from MR diffusion tensor data. Med. Image Anal. 5, 1–15 (2001)

    Article  Google Scholar 

  20. Rudin, L.I., Osher, S., Fatemi, E.: Nonlinear variation based noise removal algorithms. Physica D 60, 259–268 (1992)

    Article  MATH  Google Scholar 

  21. Tang, B., Sapiro, G., Caselles, V.: Diffusion of General Data on Non-Flat Manifolds via Harmonic Maps Theory: The Direction Diffusion Case. IJCV 36(2), 149–161 (2000)

    Article  Google Scholar 

  22. Tschumperle, D., Deriche, R.: Regularization of orthonormal vector sets using coupled PDE’s. In: Proceedings of IEEE Workshop on Variational and Level Set Methods in Computer Vision, July 2001, pp. 3–10 (2001)

    Google Scholar 

  23. Vemuri, B.C., Chen, Y., Rao, M., McGraw, T., Wang, Z., Mareci, T.: Fiber Tract Mapping from Diffusion Tensor MRI. In: Proceedings of IEEE Workshop on Variational and Level Set Methods in Computer Vision, July 2001, pp. 81–88 (2001)

    Google Scholar 

  24. Weickert, J.: A review of nonlinear diffusion filtering. In: ter Haar Romeny, B.M., Florack, L.M.J., Viergever, M.A. (eds.) Scale-Space 1997. LNCS, vol. 1252, pp. 3–28. Springer, Heidelberg (1997)

    Google Scholar 

  25. Westin, C.F., Maier, S.E., Mamata, H., Nabavi, A., Jolesz, F.A., Kikinis, R.: Processing and visualization for diffusion tensor MRI. Med. Image Anal. 6, 93–108 (2002)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2003 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Wang, Z., Vemuri, B.C., Chen, Y., Mareci, T. (2003). A Constrained Variational Principle for Direct Estimation and Smoothing of the Diffusion Tensor Field from DWI. In: Taylor, C., Noble, J.A. (eds) Information Processing in Medical Imaging. IPMI 2003. Lecture Notes in Computer Science, vol 2732. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-45087-0_55

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-45087-0_55

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-40560-3

  • Online ISBN: 978-3-540-45087-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics