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A Study of Aquatic Toxicity Using Artificial Neural Networks

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Knowledge-Based Intelligent Information and Engineering Systems (KES 2003)

Abstract

Artificial neural networks represent an excellent tool to develop real-world applications especially when traditional methods fail. Learning ability from data, classification capabilities, generalization and noise tolerance are few advantages that can be used successfully in the field of toxicity prediction. This paper focuses on the problem of describing the properties, effects or biological activities associated with chemicals through relations dependent on their structure, known as Quantitative Structure-Activity Relationship (QSAR) problem. We proposed a model using neural networks to predict the toxicity of chemicals with respect of three QSAR postulates: “the molecular structure is responsible for all the activities”, “similar compounds have similar biological and chemo-physical properties” and “QSAR is applicable only to similar compounds”.

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References

  1. Woo, Y.-T.: A Toxicologist’s View and Evaluation, Predictive Toxicology Challenge (PTC) 2000 – 2001. In: ECML/PKDD 2001, Freiburg (2001)

    Google Scholar 

  2. Nendza, M., Volmer, J., Klein, W.: Practical Applications of Qualitative Structure – Activity Relationships in Environmental Chemistry and Toxicology. In: Karcher, N., Devillers, J. (eds.), pp. 213–240. Kluwer Academic Publishers, Dordrecht (1990)

    Google Scholar 

  3. Hansch, C., Hoekman, D., Leo, A., Zhang, L., Li, P.: The expanding role of quantitative structure-activity relationship (QSAR) in toxicology. Toxicology Letters 79, 45–53 (1995)

    Article  Google Scholar 

  4. Benfenati, E., Gini, G.: Computational predictive programs (expert systems) in toxicology. Toxicology 119, 213–225 (1997)

    Article  Google Scholar 

  5. Gini, G.: Predictive Toxicology of Chemicals: Experience and Impact of AI tools. AI MAGAZINE 21/3, 81–84 (2000)

    Google Scholar 

  6. Adamczak, R., Duch, W.: Neural networks for structure-activity relationship problems. In: Procs. of the 5th Conf. on Neural Networks and Soft Computing, Zakopane, pp. 669–674 (2000)

    Google Scholar 

  7. Neagu, C.D., Aptula, A.O., Gini, G.: Neural and Neuro-Fuzzy Models of Toxic Action of Phenols. In: Procs. of IEEE International Symposium ‘Intelligent Systems’ Methodology, Models, Applications in Emerging Technologies IS 2002, Varna, pp. 283–288 (2002)

    Google Scholar 

  8. Neagu, C.D., Benfenati, E., Gini, G., Mazzatorta, P., Roncaglioni, A.: Neuro- Fuzzy Knowledge Representation for Toxicity Prediction of Organic Compounds. In: Procs. of the 15th European Conf. on Artificial Intelligence ECAI 2002, Lyon, France, pp. 498–502 (2002)

    Google Scholar 

  9. Benfenati, E., Mazzatorta, P., Neagu, C.D., Gini, G.: Combining classifiers of pesticides toxicity through a neuro-fuzzy approach. In: Roli, F., Kittler, J. (eds.) MCS 2002. LNCS, vol. 2364, pp. 293–303. Springer, Heidelberg (2002)

    Chapter  Google Scholar 

  10. Neagu, C.D., Gini, G.: Neuro-Fuzzy Knowledge Integration applied in Toxicity Prediction. In: Abraham, A., Jain, L.C., Jain, R.K., Faucher, C. (eds.) Innovations in Knowledge Engineering, ch. 13, Physica-Verlag, Heidelberg (2003) (to appear)

    Google Scholar 

  11. König, C., Gini, G., Benfenati, E., Craciun, M.: Combination of local experts using a multi-class classifier. International Journal of Pattern Recognition and Artificial Intelligence, IJPRAI Special Issue on Fusion of Multiple Classifiers (2003) (submitted)

    Google Scholar 

  12. Schultz, T.W., Sinks, G.D., Cronin, M.T.D.: Identification of mechanisms of toxic action of -phenols to Tetrahymena pyriformis from molecular descriptors. In: Chen, F., Schuurmann, G. (eds.) Quantitative Structure-Activity Relationships in Environmental Sciences - VII, pp. 329–342. SETAC Press, Pensacola (1997)

    Google Scholar 

  13. Kohonen, T.: Self-Organization and Associative Memory, 2nd edn. Springer, Berlin (1997)

    Google Scholar 

  14. ECOTOX, ECOTOXicology Database System: prepared for the U.S. Environmental Protection Agency, Office of Research, Laboratory Mid- Continent Division (MED), Duluth, Minnesota, by OAO Corporation Duluth Minnesota (2000)

    Google Scholar 

  15. Russom, C.L., Bradbury, S.P., Hammermeister, D.E., Drummond, S.J.: Predicting modes of toxic action from chemical structure: acute toxicity in the fathead minnow (Pimephales promelas). Environmental Toxicology Chemistry 16, 948–967 (1997)

    Google Scholar 

  16. Katrizky, A.R., Lobanov, V.S., Karelson, M.: CODESSA Comprehensive Descriptors for structural and Statistical Analysis, Reference manual, Gainesville (1994)

    Google Scholar 

  17. Funahashi, K.: On the Approximate Realization of Continuous Mappings by Neural Networks. Neural Networks 2, 183–192 (1989)

    Article  Google Scholar 

  18. Cronin, M.T.D., Manga, N., Seward, R., Sinks, G.D., Schultz, T.W.: Parameterization of electrophilicity for the prediction of toxicity of aromatic compounds. Chem. Res. Toxicol. 14, 1498–1505 (2001)

    Article  Google Scholar 

  19. Sinks, G.D., Schultz, T.W.: Correlation of Tetrahymena and Pimephales toxicity: evaluation of 100 additional compounds. Environ. Toxicol. Chem. 20, 917–921 (2001)

    Google Scholar 

  20. Cronin, M.T.D., Aptula, A.O., Duffy, J.C., Netzeva, T.I., Rowe, P.H., Valkova, I.V., Schultz, T.W.: Comparative assessment of methods to develop QSARs for the prediction of the toxicity of phenols to Tetrahymena pyriformis. Chemosphere 49, 1201–1221 (2002)

    Article  Google Scholar 

  21. Cronin, M.T.D., Schultz, T.W.: Structure-toxicity relationships for phenols to Tetrahymena pyriformis. Chemosphere 32, 1453–1468 (1996)

    Article  Google Scholar 

  22. http://www.mathworks.com/access/helpdesk/help/toolbox/nnet/nnet.shtml

  23. Hagan, M.T., Demuth, H.B., Beale, M.H.: Neural Network Design. PWS Publishing, Boston (1996)

    Google Scholar 

  24. Intelligent Modelling Algorithms for General Evaluation of TOXicities – IMAGETOX, EU FP5 HPRN-CT-1999-00015, http://airlab.elet.polimi.it/imagetox/

  25. Development of Environmental Modules for Evaluation of Toxicity of pesticide Residues in Agriculture – DEMETRA, EU FP5 QLK5-CT-2002-00691, http://www.demetra-tox.net/

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Crǎciun, M.V., Neagu, D.C., König, C., Bumbaru, S. (2003). A Study of Aquatic Toxicity Using Artificial Neural Networks. In: Palade, V., Howlett, R.J., Jain, L. (eds) Knowledge-Based Intelligent Information and Engineering Systems. KES 2003. Lecture Notes in Computer Science(), vol 2774. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-45226-3_125

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  • DOI: https://doi.org/10.1007/978-3-540-45226-3_125

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-40804-8

  • Online ISBN: 978-3-540-45226-3

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