Abstract
Accurate biomechanical modelling of soft tissue is a key aspect for achieving realistic surgical simulations. However, because medical simulation is a multi-disciplinary area, researchers do not always have sufficient resources to develop an efficient and physically rigorous model for organ deformation. We address this issue by implementing a CUDA-based nonlinear finite element model into the SOFA open source framework. The proposed model is an anisotropic visco-hyperelastic constitutive formulation implemented on a graphical processor unit (GPU). After presenting results on the model’s performance we illustrate the benefits of its integration within the SOFA framework on a simulation of cataract surgery.
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References
Allard, J., Cotin, S., Faure, F., Bensoussan, P.J., Poyer, F., Duriez, C., Delingette, H., Grisoni, L.: Sofa - an open source framework for medical simulation. In: Medicine Meets Virtual Reality, pp. 13–18 (2007)
Cotin, S., Delingette, H., Ayache, N.: Real-time elastic deformations of soft tissues for surgery simulation. IEEE Transactions On Visualization and Computer Graphics 5 (1), 62–73 (1999)
Wu, W., Heng, P.: An improved scheme of an interactive finite element model for 3D soft-tissue cutting and deformation. Computer Animation and Virtual Worlds 21 (8-10), 707–716 (2005)
Felippa, C.A.: A systematic approach to the element independent corotational dynamics of finite elements. Technical Report CU-CAS-00-03, Center for Aerospace Structures (2000)
Miller, K., Joldes, G., Lance, D., Wittek, A.: Total Lagrangian explicit dynamics finite element algorithm for computing soft tissue deformation. Communications in Numerical Methods in Engineering 23(2), 121–134 (2007)
Taylor, Z., Cheng, M., Ourselin, S.: Real-time nonlinear finite element analysis for surgical simulation using graphics processing units, pp. 701–708 (2007)
Taylor, Z., Cheng, M., Ourselin, S.: High-speed nonlinear finite element analysis for surgical simulation using graphics processing units. IEEE Transactions on Medical Imaging 27(5), 650–663 (2008)
NVIDIA Programming Guide 1.1, http://developer.nvidia.com/object/cuda.html
Hughes, T.J.R.: The Finite Element Method: Linear Static and Dynamic Finite Element Analyses. Prentice-Hall, Inc., Englewood Cliffs (1987)
Flanagan, D.P., Belytschko, T.: A uniform strain hexahedron and quadrilateral with orthogonal hourglass control. International Journal for Numerical Methods in Engineering 17, 679–706 (1981)
Buzard, K.A., Hoeltzel, D.A.: Biomechanics of the cornea. In: Proceedings of SPIE, vol. 1423, pp. 70–81 (1991)
Zeng, Y., Yang, J., Huang, K., Lee, Z., Lee, X.: A comparison of biomechanical properties between human and porcine cornea. Journal of biomechanics (2001)
Kobayashi, A., Staberg, L., Schlegel, W.: Viscoelastic properties of human cornea. Journal of experimental mechanics (2006)
Elsheikh, A., Brown, M., Alhasso, D., Rama, P., Campanelli, M., Garway-Heath, D.: Experimental assessment of corneal anisotropy. Journal of refractive surgery (2008)
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Comas, O., Taylor, Z.A., Allard, J., Ourselin, S., Cotin, S., Passenger, J. (2008). Efficient Nonlinear FEM for Soft Tissue Modelling and Its GPU Implementation within the Open Source Framework SOFA. In: Bello, F., Edwards, P.J.E. (eds) Biomedical Simulation. ISBMS 2008. Lecture Notes in Computer Science, vol 5104. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-70521-5_4
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DOI: https://doi.org/10.1007/978-3-540-70521-5_4
Publisher Name: Springer, Berlin, Heidelberg
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