Skip to main content

Correlations of Partial Words

  • Conference paper
STACS 2007 (STACS 2007)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 4393))

Included in the following conference series:

  • 1122 Accesses

Abstract

Partial words are strings over a finite alphabet that may contain a number of “do not know” symbols. In this paper, we introduce the notions of binary and ternary correlations, which are binary and ternary vectors indicating the periods and weak periods of partial words. Extending a result of Guibas and Odlyzko, we characterize precisely which of these vectors represent the (weak) period sets of partial words and prove that all valid correlations may be taken over the binary alphabet. We show that the sets of all such vectors of a given length form distributive lattices under inclusion. We also show that there is a well defined minimal set of generators for any binary correlation of length n and demonstrate that these generating sets are the primitive subsets of {1, 2,..., n − 1}. Finally, we investigate the number of correlations of length n.

This material is based upon work supported by the National Science Foundation under Grant No. DMS–0452020. A World Wide Web server interface has been established at www.uncg.edu/mat/research/correlations for automated use of the program. We thank the referees of a preliminary version of this paper for their very valuable comments and suggestions.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Berstel, J., Boasson, L.: Partial Words and a Theorem of Fine and Wilf. Theoret. Comput. Sci. 218, 135–141 (1999)

    Article  MathSciNet  MATH  Google Scholar 

  2. Blanchet-Sadri, F.: Periodicity on Partial Words. Comput. Math. Appl. 47, 71–82 (2004)

    Article  MathSciNet  MATH  Google Scholar 

  3. Blanchet-Sadri, F.: Chriscoe, Ajay: Local Periods and Binary Partial Words: An Algorithm. Theoret. Comput. Sci. 314, 189–216 (2004), http://www.uncg.edu/mat/AlgBin

    Article  MathSciNet  MATH  Google Scholar 

  4. Blanchet-Sadri, F., Duncan, S.: Partial Words and the Critical Factorization Theorem. J. Combin. Theory Ser. A 109, 221–245 (2005), http://www.uncg.edu/mat/cft

    Article  MathSciNet  MATH  Google Scholar 

  5. Blanchet-Sadri, F., Hegstrom, R.A.: Partial Words and a Theorem of Fine and Wilf Revisited. Theoret. Comput. Sci. 270, 401–419 (2002)

    Article  MathSciNet  MATH  Google Scholar 

  6. Blanchet-Sadri, F., Wetzler, N.D.: Partial Words and the Critical Factorization Theorem Revisited. http://www.uncg.edu/mat/research/cft2

  7. Césari, Y., Vincent, M.: Une Caractérisation des Mots Périodiques. C.R. Acad. Sci. Paris 268, 1175–1177 (1978)

    Google Scholar 

  8. Erdös, P.: Note on Sequences of Integers No One of Which is Divisible by Another. J. London Math. Soc. 10, 126–128 (1935)

    Article  MATH  Google Scholar 

  9. Fine, N.J., Wilf, H.S.: Uniqueness Theorems for Periodic Functions. Proc. Amer. Math. Soc. 16, 109–114 (1965)

    Article  MathSciNet  MATH  Google Scholar 

  10. Guibas, L.J., Odlyzko, A.M.: Periods in Strings. J. Combin. Theory Ser. A 30, 19–42 (1981)

    Article  MathSciNet  MATH  Google Scholar 

  11. Kolpakov, R., Kucherov, G.: Finding Approximate Repetitions Under Hamming Distance. In: Meyer auf der Heide, F. (ed.) ESA 2001. LNCS, vol. 2161, pp. 170–181. Springer, Heidelberg (2001)

    Chapter  Google Scholar 

  12. Kolpakov, R., Kucherov, G.: Finding Approximate Repetitions Under Hamming Distance. Theoret. Comput. Sci. 33, 135–156 (2003)

    Article  MathSciNet  Google Scholar 

  13. Landau, G., Schmidt, J.: An Algorithm for Approximate Tandem Repeats. In: Apostolico, A., et al. (eds.) CPM 1993. LNCS, vol. 684, pp. 120–133. Springer, Heidelberg (1993)

    Chapter  Google Scholar 

  14. Landau, G.M., Schmidt, J.P., Sokol, D.: An Algorithm for Approximate Tandem Repeats. J. Comput. Biology 8, 1–18 (2001)

    Article  Google Scholar 

  15. Lothaire, M.: Algebraic Combinatorics on Words. Cambridge University Press, Cambridge (2002)

    MATH  Google Scholar 

  16. Rivals, E., Rahmann, S.: Combinatorics of Periods in Strings. J. Combin. Theory Ser. A 104, 95–113 (2003)

    Article  MathSciNet  MATH  Google Scholar 

  17. Schmidt, J.P.: All Highest Scoring Paths in Weighted Grid Graphs and Their Application to Finding All Approximate Repeats in Strings. SIAM J. Comput. 27, 972–992 (1998)

    Article  MathSciNet  MATH  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Wolfgang Thomas Pascal Weil

Rights and permissions

Reprints and permissions

Copyright information

© 2007 Springer Berlin Heidelberg

About this paper

Cite this paper

Blanchet-Sadri, F., Gafni, J.D., Wilson, K.H. (2007). Correlations of Partial Words. In: Thomas, W., Weil, P. (eds) STACS 2007. STACS 2007. Lecture Notes in Computer Science, vol 4393. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-70918-3_9

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-70918-3_9

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-70917-6

  • Online ISBN: 978-3-540-70918-3

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics