Abstract
The subcellular localisation of proteins in living cells is a crucial means for the determination of their function. We propose an approach to realise such a protein localisation based on microscope images. In order to reach this goal, appropriate features are selected. Then, the initial feature set is optimised by a genetic algorithm. The actual classification of possible protein localisations is accomplished by an incremental neural network which not only achieves a very high accuracy, but enables on-line learning, as well.
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References
Chen X, Velliste M, Murphy RF. Automated interpretation of subcellular patterns in fluorescence microscope images for location proteomics. Cytometry 2006;69A:631–640.
Murphy RF, Velliste M, Porreca G. Robust numerical features for description and classification of subcellular location patterns in fluorescence microscope images. Journal of VLSI Signal Processing 2003;35:311–321.
Huang K, Velliste M, Murphy RF. Feature reduction for improved recognition of subcellular location patterns in fluorescence microscope images. Procs SPIE 2003;4962:307–318.
Boland MV, Murphy RF. A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells. Bioinformatics 2001;17(12):1213–1223.
Raymer ML, Punch WF, Goodman ED, Kuhn LA, Jain AK. Dimensionality reduction using genetic algorithms. IEEE Trans on Evolutionary Computation 2000;4(2):164–171.
Tscherepanow M, Zöllner F, Kummert F. Classification of segmented regions in brightfield microscope images. Procs ICPR 2006;3:972–975.
Khotanzad Alireza, Hong YawHua. Invariant Image Recognition by Zernike Moments. IEEE Trans on Pattern Analysis and Machine Intelligence 1990;12(5):489–497.
Soille P. Morphological Image Analysis: Principles and Applications. Springer; 2003.
Wu CM, Chen YC, Hsieh KS. Texture features for classification of ultrasonic liver images. IEEE Trans on Medical Imaging 1992;11(2):141–152.
Vakil-Baghmisheh MT, Pavešić N. A fast simplified fuzzy ARTMAP network. Neural Processing Letters 2003;17(3):273–316.
Engelbrecht AP. Fundamentals of Computational Swarm Intelligence. John Wiley & Sons; 2005.
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© 2007 Springer-Verlag Berlin Heidelberg
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Tscherepanow, M., Kummert, F. (2007). Subcellular Localisation of Proteins in Living Cells Using a Genetic Algorithm and an Incremental Neural Network. In: Horsch, A., Deserno, T.M., Handels, H., Meinzer, HP., Tolxdorff, T. (eds) Bildverarbeitung für die Medizin 2007. Informatik aktuell. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-71091-2_3
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DOI: https://doi.org/10.1007/978-3-540-71091-2_3
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-71090-5
Online ISBN: 978-3-540-71091-2
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