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A Hybrid Symbolic-Statistical Approach to Modeling Metabolic Networks

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Knowledge-Based Intelligent Information and Engineering Systems (KES 2007)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 4692))

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Abstract

Biological systems consist of many components and interactions between them. In Systems Biology the principal problem is modeling complex biological systems and reconstructing interactions between their building blocks. Symbolic machine learning approaches have the power to model structured domains and relations among objects. However biological domains require uncertainty handling due to their hidden complex nature. Statistical machine learning approaches have the potential to model uncertainty in a robust manner. In this paper we apply a hybrid symbolic-statistical framework to modeling metabolic pathways and show through experiments that complex phenomenon such as biochemical reactions in cell’s metabolic networks can be modeled and simulated in the proposed framework.

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References

  1. Kitano, H.: Foundations of Systems Biology. MIT Press, Redmond, Washington (2001)

    Google Scholar 

  2. Kriete, A., Eils, R.: Computational Systems Biology. Elsevier - Academic Press, Amsterdam (2005)

    Google Scholar 

  3. Page, D., Craven, M.: Biological Applications of Multi-Relational Data Mining. Appears in SIGKDD Explorations, special issue on Multi-Relational Data Mining (2003)

    Google Scholar 

  4. Bryant, C.H., Muggleton, S.H., Oliver, S.G., Kell, D.B., Reiser, P., King, R.D.: Combining inductive logic programming, active learning and robotics to discover the function of genes. Electronic Transactions in Artificial Intelligence 5-B1(012), 1–36 (2001)

    Google Scholar 

  5. Angelopoulos, N., Muggleton, S.H.: Machine learning metabolic pathway descriptions using a probabilistic relational representation. Electronic Transactions in Artificial Intelligence 6 (2002)

    Google Scholar 

  6. Sato, T., Kameya, Y.: PRISM: A symbolic-statistical modeling language. In: Proceedings of the 15th International Joint Conference on Artificial Intelligence, pp. 1330–1335 (1997)

    Google Scholar 

  7. Sato, T., Kameya, Y.: Parameter learning of logic programs for symbolic-statistical modeling. Journal of Artificial Intelligence Research 15, 391–454 (2001)

    MATH  Google Scholar 

  8. Muggleton, S.H.: Stochastic logic programs. In: de Raedt, L. (ed.) Advances in Inductive Logic Programming, pp. 254–264. IOS Press, Amsterdam (1996)

    Google Scholar 

  9. Cussens, J.: Parameter estimation in stochastic logic programs. Machine Learning 44(3), 245–271 (2001)

    Article  MATH  Google Scholar 

  10. Muggleton, S.H.: Learning structure and parameters of stochastic logic programs. In: Proceedings of the 10th International Conference on Inductive Logic Programming, Springer, Berlin (2002)

    Google Scholar 

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Bruno Apolloni Robert J. Howlett Lakhmi Jain

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© 2007 Springer-Verlag Berlin Heidelberg

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Biba, M., Ferilli, S., Di Mauro, N., Basile, T.M.A. (2007). A Hybrid Symbolic-Statistical Approach to Modeling Metabolic Networks. In: Apolloni, B., Howlett, R.J., Jain, L. (eds) Knowledge-Based Intelligent Information and Engineering Systems. KES 2007. Lecture Notes in Computer Science(), vol 4692. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-74819-9_17

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  • DOI: https://doi.org/10.1007/978-3-540-74819-9_17

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-74817-5

  • Online ISBN: 978-3-540-74819-9

  • eBook Packages: Computer ScienceComputer Science (R0)

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