Abstract
This paper presents an implementation of the MPI-IO interface for GPFS inside ROMIO distribution. The experimental section presents a performance comparison among three collective I/O implementations: two-phase I/O, the default file system independent method of ROMIO, view-based I/O, a file system-independent method we developed in a previous work and a GPFS specific collective I/O implementation based on data-shipping. The results show that data shipping-based collective I/O performs better for writing, while view-based I/O for reading.
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References
Ligon, W., Ross, R.: An Overview of the Parallel Virtual File System. In: Proceedings of the Extreme Linux Workshop (June 1999)
Inc., C.F.S.: Lustre: A scalable, high-performance file system. Cluster File Systems Inc. white paper, version 1.0 (November 2002), http://www.lustre.org/docs/whitepaper.pdf
Schmuck, F., Haskin, R.: GPFS: A Shared-Disk File System for Large Computing Clusters. In: Proceedings of FAST (2002)
Message Passing Interface Forum: MPI: A Message-Passing Interface Standard (1995)
Corbett, P., Feitelson, D., Hsu, Y., Prost, J.P., Snir, M., Fineberg, S., Nitzberg, B., Traversat, B., Wong, P.: MPI-IO: A parallel file I/O interface for MPI. Technical Report NAS-95-002, NASA Ames Research Center, Moffet Field, CA (January 1995)
Prost, J.P., Treumann, R., Hedges, R., Jia, B., Koniges, A.: MPI-IO/GPFS, an optimized implementation of MPI-IO on top of GPFS. In: Supercomputing 2001: Proceedings of the 2001 ACM/IEEE conference on Supercomputing (CDROM), pp. 17–17. ACM Press, New York (2001)
Kotz, D.: Disk-directed I/O for MIMD Multiprocessors. In: Proc. of the First USENIX Symp. on Operating Systems Design and Implementation (1994)
del Rosario, J., Bordawekar, R., Choudhary, A.: Improved parallel I/O via a two-phase run-time access strategy. In: Proc. of IPPS Workshop on Input/Output in Parallel Computer Systems (1993)
Yu, W., Vetter, J., Canon, R.S., Jiang, S.: Exploiting Lustre File Joining for Effective Collective IO. In: CCGRID 2007: Proceedings of the Seventh IEEE International Symposium on Cluster Computing and the Grid, pp. 267–274. IEEE Computer Society Press, Washington (2007)
Thakur, R., Gropp, W., Lusk, E.: Optimizing Noncontiguous Accesses in MPI-IO. Parallel Computing 28(1), 83–105 (2002)
keng Liao, W., Coloma, K., Choudhary, A., Ward, L., Russel, E., Tideman, S.: Collective Caching: Application-Aware Client-Side File Caching. In: Proceedings of the 14th International Symposium on High Performance Distributed Computing (HPDC) (July 2005)
keng Liao, W., Coloma, K., Choudhary, A.N., Ward, L.: Cooperative Write-Behind Data Buffering for MPI I/O. In: PVM/MPI, pp. 102–109 (2005)
Isaila, F., Malpohl, G., Olaru, V., Szeder, G., Tichy, W.: Integrating Collective I/O and Cooperative Caching into the Clusterfile Parallel File System. In: Proceedings of ACM International Conference on Supercomputing (ICS), pp. 315–324. ACM Press, New York (2004)
Ching, A., Choudhary, A., Liao, W.K., Ross, R., Gropp, W.: Efficient Structured Data Access in Parallel File Systems. In: Proceedings of the IEEE International Conference on Cluster Computing (December 2003)
Thakur, R., Gropp, W., Lusk, E.: An abstract device interface for implementing portable paralllel-I/O interfaces
Blas, J.G., Florin Isaila, D.E.S., Carretero, J.: View-based collective i/o for mpi-io. In: CCGRID 2008: Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (2008)
Wong, P., der Wijngaart, R.: NAS Parallel Benchmarks I/O Version 2.4. Technical Report NAS-03-002, NASA Ames Research Center, Moffet Field, CA (January 2003)
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Blas, F.J.G., Isailă, F., Carretero, J., Großmann, T. (2008). Implementation and Evaluation of an MPI-IO Interface for GPFS in ROMIO. In: Lastovetsky, A., Kechadi, T., Dongarra, J. (eds) Recent Advances in Parallel Virtual Machine and Message Passing Interface. EuroPVM/MPI 2008. Lecture Notes in Computer Science, vol 5205. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-87475-1_24
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DOI: https://doi.org/10.1007/978-3-540-87475-1_24
Publisher Name: Springer, Berlin, Heidelberg
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