Skip to main content

From the Bench to the Bedside: The Role of Semantic Web and Translational Medicine for Enabling the Next Generation Healthcare Enterprise

  • Conference paper
Biomedical Engineering Systems and Technologies (BIOSTEC 2008)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 25))

Abstract

The success of new innovations and technologies are very often disruptive in nature. At the same time, they enable novel next generation infrastructures and solutions. These solutions introduce great efficiencies in the form of efficient processes and the ability to create, organize, share and manage knowledge effectively; and the same time provide crucial enablers for proposing and realizing new visions. In this paper, we propose a new vision of the next generation healthcare enterprise and discuss how Translational Medicine, which aims to improve communication between the basic and clinical sciences, is a key requirement for achieving this vision. This will lead therapeutic insights may be derived from new scientific ideas - and vice versa. Translation research goes from bench to bedside, where theories emerging from preclinical experimentation are tested on disease-affected human subjects, and from bedside to bench, where information obtained from preliminary human experimentation can be used to refine our understanding of the biological principles underpinning the heterogeneity of human disease and polymorphism(s). Informatics and semantic technologies in particular, has a big role to play in making this a reality. We identify critical requirements, viz., data integration, clinical decision support and knowledge maintenance and provenance; and illustrate semantics-based solutions wrt example scenarios and use cases.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Berners-Lee, T., Hendler, J., Lassila, O.: The Semantic Web. Scientific American 284(5), 34–43 (2001)

    Article  Google Scholar 

  2. Journal of Translational Medicine, http://www.translational-medicine.com/info/about

  3. Kashyap, V., Neumann, E., Hongsermeier, T.: Tutorial on Semantics in the Healthcare and LifeSciences. In: The 15th International World Wide Conference (WWW 2006), Edingburgh, UK (May 2006), http://lists.w3.org/Archives/Public/www-archive/2006Jun/att-0010/Semantics_for_HCLS.pdf

  4. Resource Description Framework, http://www.w3.org/RDF

  5. OWL Web Ontology Language Review, http://www.w3.org/TR/owl-features

  6. Snomed International, http://www.ihtsdo.org/our-standards/snomed-ct

  7. International Classification of Diseases, http://www.who.int/classifications/icd/en/

  8. BioPAX, http://www.biopax.org

  9. The Gene Ontology, http://www.geneontology.org

  10. W3C Semantic Web Healthcare and Life Sciences Interest Group, http://www.w3.org/2001/sw/hcls

  11. Detailed Clinical Models, http://www.detailedclinicalmodels.org

  12. HL7 Reference Information Model, http://hl7projects.hl7.nscee.edu/projects/design-repos

  13. CDISC Standards – Study Data Tabulation Model/Study Data Submission Model, http://www.cdisc.org/models/sds/v3.1/index.html

  14. Goldberg, H., Vashevko, M., Postilnik, A., Smith, K., Plaks, N., Blumenfeld, B.: Evaluation of a Commercial Rules Engine as a basis for a Clinical Decision Support Service. In: Proceedings of the Annual Symposium on Biomedical and Health Informatics, AMIA 2006 (2006)

    Google Scholar 

  15. Kashyap, V., Morales, A., Hongsermeier, T.: Implementing Clinical Decision Support: Achieving Scalability and Maintainability by combining Business Rules with Ontologies. In: Proceedings of the Annual Symposium on Biomedical and Health Informatics, AMIA 2006 (2006)

    Google Scholar 

  16. Greenes, R.A., Sordo, M.A., Zaccagnini, D., Meyer, M., Kuperman, G.: Design of a Standards-Based External Rules Engine for Decision Support in a Variety of Application Contexts: Report of a Feasibility Study at Partners HealthCare System. In: Proceedings of MEDINFO – AMIA (2004)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2008 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Kashyap, V. (2008). From the Bench to the Bedside: The Role of Semantic Web and Translational Medicine for Enabling the Next Generation Healthcare Enterprise. In: Fred, A., Filipe, J., Gamboa, H. (eds) Biomedical Engineering Systems and Technologies. BIOSTEC 2008. Communications in Computer and Information Science, vol 25. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-92219-3_3

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-92219-3_3

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-92218-6

  • Online ISBN: 978-3-540-92219-3

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics