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Bioinformatics and Computational Biology

First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009, Proceedings

  • Conference proceedings
  • © 2009

Overview

Editors:
  1. Sanguthevar Rajasekaran

    1. Department of Computer Science and Engineering, University of Connecticut, Storrs, USA

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 5462)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BICoB 2009.

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About this book

This book constitutes the refereed proceedings of the First International on Bioinformatics and Computational Biology, BICoB 2007, held in New Orleans, LA, USA, in April 2007. The 30 revised full papers presented together with 10 invited lectures were carefully reviewed and selected from 72 initial submissions. The papers address current research in the area of bioinformatics and computational biology fostering the advancement of computing techniques and their application to life sciences in topics such as genome analysis sequence analysis, phylogenetics, structural bioinformatics, analysis of high-throughput biological data, genetics and population analysis, as well as systems biology.

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Table of contents (40 papers)

  1. Front Matter

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  2. Invited Talks

    1. Association Analysis Techniques for Bioinformatics Problems

      • Gowtham Atluri, Rohit Gupta, Gang Fang, Gaurav Pandey, Michael Steinbach, Vipin Kumar
      Pages 1-13

    2. Analyzing and Interrogating Biological Networks (Abstract)

      • Eric Banks, Elena Nabieva, Bernard Chazelle, Ryan Peterson, Mona Singh
      Pages 14-15

    3. From Architecture to Function (and Back) in Bio-networks

      • Vladimir Filkov
      Pages 16-17

    4. A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants

      • Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu
      Pages 18-29

    5. Assembly of Large Genomes from Paired Short Reads

      • Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru
      Pages 30-43

    6. Amino Acid Classification and Hash Seeds for Homology Search

      • Weiming Li, Bin Ma, Kaizhong Zhang
      Pages 44-51

    7. Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads

      • Ion Măndoiu
      Pages 52-53

    8. Gene Networks Viewed through Two Models

      • Satoru Miyano, Rui Yamaguchi, Yoshinori Tamada, Masao Nagasaki, Seiya Imoto
      Pages 54-66

    9. Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper

      • Corban G. Rivera, T. M. Murali
      Pages 67-78

    10. The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning

      • Thomas K. F. Wong, S. M. Yiu, T. W. Lam, Wing-Kin Sung
      Pages 79-89

  3. Refereed Papers

    1. RNA Pseudoknot Folding through Inference and Identification Using TAGRNA

      • Sahar Al Seesi, Sanguthevar Rajasekaran, Reda Ammar
      Pages 90-101

    2. Comparing Bacterial Genomes by Searching Their Common Intervals

      • Sébastien Angibaud, Damien Eveillard, Guillaume Fertin, Irena Rusu
      Pages 102-113

    3. Generalized Binary Tanglegrams: Algorithms and Applications

      • Mukul S. Bansal, Wen-Chieh Chang, Oliver Eulenstein, David Fernández-Baca
      Pages 114-125

    4. Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS Data

      • Felix Bollenbeck, Stephanie Kaspar, Hans-Peter Mock, Diana Weier, Udo Seiffert
      Pages 126-138

    5. Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding

      • Christina Boucher, Daniel G. Brown
      Pages 139-150

    6. A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets

      • Doruk Bozdağ, Jeffrey D. Parvin, Umit V. Catalyurek
      Pages 151-163

    7. Computational Protocol for Screening GPI-anchored Proteins

      • Wei Cao, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu
      Pages 164-175

    8. Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors

      • Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer
      Pages 176-186

    9. An Agent-Based Model of Solid Tumor Progression

      • Didier Dréau, Dimitre Stanimirov, Ted Carmichael, Mirsad Hadzikadic
      Pages 187-198
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Other volumes

  1. Bioinformatics and Computational Biology

Editors and Affiliations

  • Department of Computer Science and Engineering, University of Connecticut, Storrs, USA

    Sanguthevar Rajasekaran

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