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Multi-Optimisation Consensus Clustering

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Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 5772))

Abstract

Ensemble Clustering has been developed to provide an alternative way of obtaining more stable and accurate clustering results. It aims to avoid the biases of individual clustering algorithms. However, it is still a challenge to develop an efficient and robust method for Ensemble Clustering. Based on an existing ensemble clustering method, Consensus Clustering (CC), this paper introduces an advanced Consensus Clustering algorithm called Multi-Optimisation Consensus Clustering (MOCC), which utilises an optimised Agreement Separation criterion and a Multi-Optimisation framework to improve the performance of CC. Fifteen different data sets are used for evaluating the performance of MOCC. The results reveal that MOCC can generate more accurate clustering results than the original CC algorithm.

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References

  1. Swift, S., Tucker, A., Vincotti, V., Martin, N., Orengo, C., Liu, X., Kellam, P.: Consensus Clustering and Functional Interpretation of Gene-Expression Data. Genome Biology 5(11), R94.1–R94.16 (2004)

    Google Scholar 

  2. Hirsch, M., Swift, S., Liu, X.: Optimal Search Space for Clustering Gene Expression Data Via Consensus. Journal of Computational Biology 14(10), 1327–1341 (2007)

    Article  MathSciNet  Google Scholar 

  3. Hornik, K.: A Clue for Cluster Ensembles. Journal of Statistical Software 14(12) (2005), http://www.jstatsoft.org/v14/i12/

  4. Jain, A.K., Murty, M.N., Flynn, P.J.: Data Clustering: A Review. ACM Computing Surveys 31(3), 264–323 (1999)

    Article  Google Scholar 

  5. Lv, T., Huang, S., Zhang, X., Wang, Z.: Combining Multiple Clustering Methods Based on Core Group. In: Second International Conference on Semantics, Knowledge, and Grid (SKG 2006), p. 29 (2006)

    Google Scholar 

  6. Strehl, A., Ghosh, J.: Cluster Ensembles — a Knowledge Reuse Framework for Combining Multiple Partitions. J. Mach. Learn. Res. 3, 583–617 (2003)

    MathSciNet  MATH  Google Scholar 

  7. Berkhin, P.: Survey of clustering data mining techniques. Technical Report, Accrue Software (2002)

    Google Scholar 

  8. Topchy, A., Jain, A.K., Punch, W.: Clustering Ensembles: Models of Consensus and Weak Partitions. IEEE Transactions on Pattern Analysis and Machine Intelligence 27(12), 1866–1881 (2005)

    Article  Google Scholar 

  9. Bozdech, Z., Llinás, M., Pulliam, B.L., Wong, E.D., Zhu, J., DeRisi, J.L.: The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium Falciparum. PLoS Biology 1, 85–100 (2003)

    Article  Google Scholar 

  10. Chen, G., Banerjee, N., Jaradat, S.A., Tanaka, T.S., Ko, M.S.H., Zhang, M.Q.: Evaluation and Comparison of Clustering Algorithms in Analyzing ES Cell Gene Expression Data. Statistica Sinica 12, 241–262 (2002)

    MathSciNet  MATH  Google Scholar 

  11. Snedecor, G.W., Cochran, W.G.: Statistical Methods, 7th edn., pp. 175–178. Iowa State Press, Ames (1980)

    Google Scholar 

  12. Viera, A.J., Garrett, J.M.: Understanding Interobserver Agreement: the Kappa Statistic. Fam. Med. 37, 360–363 (2005)

    Google Scholar 

  13. Yeung, K.Y., Ruzzo, W.L.: Principal Component Analysis for Clustering Gene Expression Data. Bioinformatics 17(9), 763–774 (2001)

    Article  Google Scholar 

  14. Lütkepohl, H.: New Introduction to Multiple Time Series Analysis, 1st edn., p. 49 (2007) ISBN:978-3-540-26239-8

    Google Scholar 

  15. Sims, C.A.: Macroeconomics and Reality. Econometrica, 1–48 (1980)

    Google Scholar 

  16. Bandyopadhyay, S., Saha, S., Maulik, U., Deb, K.: A Simulated Annealing based Multi-objective Optimization Algorithm: AMOSA. IEEE Transactions on Evolutionary Computation 12(3), 269–283 (2008)

    Article  Google Scholar 

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© 2009 Springer-Verlag Berlin Heidelberg

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Li, J., Swift, S., Liu, X. (2009). Multi-Optimisation Consensus Clustering. In: Adams, N.M., Robardet, C., Siebes, A., Boulicaut, JF. (eds) Advances in Intelligent Data Analysis VIII. IDA 2009. Lecture Notes in Computer Science, vol 5772. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-03915-7_30

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  • DOI: https://doi.org/10.1007/978-3-642-03915-7_30

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-03914-0

  • Online ISBN: 978-3-642-03915-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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