Abstract
This paper covers the topic of three dimensional reconstruction of small textureless formations usually found in biological samples. Generally used reconstructing algorithms do not provide sufficient accuracy for surface analysis. In order to achieve better results, combined strategy was developed, linking stereo matching algorithms with monocular depth cues such as depth from focus and depth from illumination.
Proposed approach is practically tested on bryophyte canopy structure. Recent studies concerning bryophyte structure applied various modern, computer analysis methods for determining moss layer characteristics drawing on the outcomes of a previous research on surface of soil. In contrast to active methods, this method is a non-contact passive, therefore, it does not emit any kind of radiation which can lead to interference with moss photosynthetic pigments, nor does it affect the structure of its layer. This makes it much more suitable for usage in natural environment.
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Krumnikl, M., Sojka, E., Gaura, J., Motyka, O. (2010). Three-Dimensional Reconstruction of Macroscopic Features in Biological Materials. In: Fred, A., Filipe, J., Gamboa, H. (eds) Biomedical Engineering Systems and Technologies. BIOSTEC 2009. Communications in Computer and Information Science, vol 52. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-11721-3_17
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DOI: https://doi.org/10.1007/978-3-642-11721-3_17
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