Skip to main content

Extracting the Fine Structure of the Left Cardiac Ventricle in 4D CT Data

A Semi-Automatic Segmentation Pipeline

  • Chapter
  • First Online:
  • 1577 Accesses

Part of the book series: Informatik aktuell ((INFORMAT))

Abstract

We propose a pipeline for the segmentation of the left cardiac ventricle (LV) in 4D CT data based on the random walker (RW) algorithm. A segmentation of the LV allows to extract clinical relevant parameters such as ejection fraction (EF) and volume over time (VoT), supporting diagnostic and therapy planning. The presented pipeline works aside approaches incorporating annotated databases, statistical shape modeling or atlas-based segmentation. We have tested our segmentation approach on six clinical 4D CT datasets including different pathologies and typical artifacts and compared the segmentation results to manually segmented slices. We achieve a minimum sensitivity of 86% and specificity of 96%. The resulting EF and VoT is comparable to known reference values and reflects the present pathologies correctly. Additionally, we tested three different routines for thresholding the RW probability maps. An interview with surgical and radiological experts together with high sensitivity scores indicates the superiority of the fixed threshold selection method – especially in the presence of pathologies. The segmentation is also correct near problematic fine structures such as cardiac valves, papillary muscles and the apex of the heart.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   99.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   99.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Jolly MP. Combining edge, region, and shape information to segment the left ventricle in cardiac MR images. Lect Notes Computer Sci. 2010; p. 482–90.

    Google Scholar 

  2. Zheng Y, Barbu A, Georgescu B, et al. Four-chamber heart modeling and automatic segmentation for 3-D cardiac CT volumes using marginal space learning and steerable features. IEEE Trans Med Imaging. 2008;27(11):1668–81.

    Article  Google Scholar 

  3. Kirisli HA, Schaap M, Klein Sea. Fully automatic cardiac segmentation from 3D CTA data: a multi-atlas based approach. Proc SPIE. 2010;7623:762305–1.

    Article  Google Scholar 

  4. Pfeifle M, Born S, Fischer J, et al. VolV - Eine OpenSource-Plattform für die Medizinische Visualisierung. Proc CURAC. 2007; p. 193–6.

    Google Scholar 

  5. Wellein D, Pfeifle M, Althuizes M, et al. A cortex segmentation pipeline. Proc BVM. 2010; p. 271–5.

    Google Scholar 

  6. Perona P, Malik J. Scale-space and edge detection using anisotropic diffusion. IEEE Trans Pattern Anal Mach Intell. 1990;12(7):629–39.

    Article  Google Scholar 

  7. Grady L. Random walks for image segmentation. IEEE Trans Pattern Anal Mach Intell. 2006;28(11):1768–83.

    Article  Google Scholar 

  8. Grady L, Jolly MP. Weights and topology: a study of the effects of graph construction on 3D image segmentation. Med Image Comput Comput Assist Interv. 2008; p. 153–61.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Juliane Dinse .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Dinse, J. et al. (2011). Extracting the Fine Structure of the Left Cardiac Ventricle in 4D CT Data. In: Handels, H., Ehrhardt, J., Deserno, T., Meinzer, HP., Tolxdorff, T. (eds) Bildverarbeitung für die Medizin 2011. Informatik aktuell. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-19335-4_55

Download citation

Publish with us

Policies and ethics