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Construction of Left Ventricle 3D Shape Atlas from Cardiac MRI

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Functional Imaging and Modeling of the Heart (FIMH 2011)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 6666))

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Abstract

In this paper, we present an effective algorithm to construct a 3D shape atlas for the left ventricle of heart from cardiac Magnetic Resonance Image data. We derive a framework that creates a 3D object mesh from a 2D stack of contours, based on geometry processing algorithms and a semi-constrained deformation method. The geometry processing methods include decimation, detail preserved smoothing and isotropic remeshing, and they ensure high-quality meshes. The deformation method generates subject-specific 3D models, but with global point correspondences. Once we extract 3D meshes from the sample data, generalized Procrustes analysis and Principal Component Analysis are then applied to align them together and model the shape variations. We demonstrate the algorithm via a set of experiments on a population of cardiac MRI scans. We also present modes of variation from the computed atlas for the control population, to show the shape and motion variability.

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References

  1. Cootes, T.F., Taylor, C.J., Cooper, D.H., Graham, J.: Active shape model - their training and application. CVIU 61, 38–59 (1995)

    Google Scholar 

  2. Frangl, A.F., Rueckert, D., Duncan, J.S.: Three-dimensional cardiovascular image analysis. TMI 21(9), 1005–1010 (2002)

    Google Scholar 

  3. Goodall, C.: Procrustes methods in the statistical analysis of shape. J. Roy. Statistical Society 53, 285–339 (1991)

    MathSciNet  MATH  Google Scholar 

  4. Lorensen, W.E., Cline, H.E.: Marching cubes: A high resolution 3D surface construction algorithm. In: SIGGRAPH, pp. 163–169 (1987)

    Google Scholar 

  5. Lötjönen, J., Kivistö, S., Koikkalainen, J., Smutek, D.: Statistical shape model of atria, ventricles and epicardium from short-and long-axis MR images. In: Medical Image (January 2004)

    Google Scholar 

  6. Metaxas, D., Axel, L., Qian, Z., Huang, X.: A segmentation and tracking system for 4D cardiac tagged MR images. In: EMBC, pp. 1541–1544 (2008)

    Google Scholar 

  7. Nealen, A., Igarashi, T., Sorkine, O., Alexa, M.: Laplacian mesh optimization. In: GRAPHITE, pp. 381–389 (2006)

    Google Scholar 

  8. Pettigrew, R., Oshinski, J.: MRI techniques for cardiovascular imaging. Journal of Magnetic Resoance Imaging 10, 590–601 (1999)

    Article  Google Scholar 

  9. Shen, D., Davatzikos, C.: An adaptive-focus deformable model using statistical and geometric information. TPAMI 22(8), 906–913 (2000)

    Article  Google Scholar 

  10. Wang, X., Schaerer, J., Huh, S., Qian, Z., Metaxas, D., Chen, T., Axel, L.: Reconstruction of detailed left ventricle motion from tMRI using deformable models. In: Sachse, F.B., Seemann, G. (eds.) FIHM 2007. LNCS, vol. 4466, pp. 60–69. Springer, Heidelberg (2007)

    Chapter  Google Scholar 

  11. Zhang, H., Wahle, A., Johnson, R., Scholz, T., Sonka, M.: 4D cardiac MR image analysis: Left and right ventricular morphology and function. TMI 29(2), 350–364 (2010)

    Google Scholar 

  12. Zhang, S., Wang, X., Metaxas, D., Chen, T., Axel, L.: LV surface reconstruction from sparse tMRI using laplacian surface deformation and optimization. In: ISBI, pp. 698–701 (2009)

    Google Scholar 

  13. Zhu, Y., Papademetris, X., Sinusas, A., Duncan, J.: Segmentation of the left ventricle from cardiac MR images using a subject-specific dynamical model. TMI 29(3), 669–687 (2010)

    Google Scholar 

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Zhang, S. et al. (2011). Construction of Left Ventricle 3D Shape Atlas from Cardiac MRI. In: Metaxas, D.N., Axel, L. (eds) Functional Imaging and Modeling of the Heart. FIMH 2011. Lecture Notes in Computer Science, vol 6666. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-21028-0_11

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  • DOI: https://doi.org/10.1007/978-3-642-21028-0_11

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-21027-3

  • Online ISBN: 978-3-642-21028-0

  • eBook Packages: Computer ScienceComputer Science (R0)

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