Skip to main content

Automatic Semantic Labeling of Medical Texts with Feature Structures

  • Conference paper
Text, Speech and Dialogue (TSD 2011)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 6836))

Included in the following conference series:

  • 941 Accesses

Abstract

This paper presents the results of testing two approaches in the automatic semantic labeling of medical data. For a chosen domain (diabetic patients’ discharge records) a set of domain related concepts was identified. The annotated resource is the result of a rule based application, that relies on the results of two related rule based information extraction (IE) systems, post processed in a way that makes the label structures simpler, and the boundaries of annotations more precise. The second application is a machine learning (CRF) approach in which the results of the first application are used as training data. Both applications were evaluated by comparing to manually corrected documents.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Cohen, K.B., Fox, L., Ogren, P.V., Hunter, L.: Corpus design for biomedical natural language processing. In: ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics, Detroit, pp. 38–45 (2005)

    Google Scholar 

  2. Hahn, S., Lehnen, P., Ney, H.: System combination for spoken language understanding. In: INTERSPEECH 2009. ISCA, Brisbane (2008)

    Google Scholar 

  3. Karkaletis, V., et al.: Automating accreditation of medical web content. In: Proceeding of the 18th European Conference on Artificial Intelligence (2008)

    Google Scholar 

  4. Kokkinakis, D.: A Semantically Annotated Swedish Medical Corpus. In: Proceedings of the LREC Conference, pp. 32–38 (2008)

    Google Scholar 

  5. Lehnen, P., Hahn, S., Ney, H., Mykowiecka, A.: Large scale Polish SLU. In: INTERSPEECH 2009. ISCA, Brighton (2009)

    Google Scholar 

  6. Mykowiecka, A., Marciniak, M.: Domain model for medical information extraction – the LightMedOnt ontology. In: Marciniak, M., Mykowiecka, A. (eds.) Bolc Festschrift. LNCS, vol. 5070, pp. 333–357. Springer, Heidelberg (2009)

    Google Scholar 

  7. Mykowiecka, A., Marciniak, M.: Some remarks on automatic semantic annotation of a medical corpus. In: Proc. of Third Louhi Workshop on Health Documentation Text Mining and Information Analysis at AIME (2011)

    Google Scholar 

  8. Mykowiecka, A., Marciniak, M., Kupść, A.: Rule-based information extraction from patient’s clinical data. Journal of Biomedical Informatics 42, 923–936 (2009)

    Article  Google Scholar 

  9. Mykowiecka, A., Waszczuk, J.: Semantic annotation of city transportation information dialogues using CRF method. In: Matoušek, V., Mautner, P. (eds.) TSD 2009. LNCS (LNAI), vol. 5729, pp. 411–418. Springer, Heidelberg (2009)

    Chapter  Google Scholar 

  10. Roberts, A., et al.: Building a semantically annotated corpus of clinical texts. Journal of Biomedical Informatics 42(5), 950–966 (2009)

    Article  Google Scholar 

  11. Sutton, C., McCallum, A.: An introduction to conditional random fields for relational learning. In: Getoor, L., Taskar, B. (eds.) Introduction to Statistical Relational Learning. MIT Press, Cambridge (2007)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Mykowiecka, A., Marciniak, M. (2011). Automatic Semantic Labeling of Medical Texts with Feature Structures. In: Habernal, I., Matoušek, V. (eds) Text, Speech and Dialogue. TSD 2011. Lecture Notes in Computer Science(), vol 6836. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-23538-2_7

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-23538-2_7

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-23537-5

  • Online ISBN: 978-3-642-23538-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics