Skip to main content

Mining and Information Integration Practice for Chinese Bibliographic Database of Life Sciences

  • Conference paper
Advances in Data Mining. Applications and Theoretical Aspects (ICDM 2013)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 7987))

Included in the following conference series:

  • 1831 Accesses

Abstract

With fast development of life science research, countless achievements have been generated and scattered in various literatures. Information providers are facing the challenge of satisfying users’ needs for more efficient and intelligent retrieval. Information integration and mining are promising ways that become more and more important. This paper describes how protein related information is mined from the Chinese Biological Abstract (CBA) database, and integrated with corresponding information in the Universal Protein Resource (Uniprot database). With the collaboration of European Bioinformatics Institute (EBI), integration with corresponding protein information in the Uniprot database is achieved. This paper describes the integration and mapping between Chinese bibliographic databases and authoritative factual databases through relevant text mining works. It would be helpful for extension, utilization and mining of Chinese bibliographic resources, as well as cross lingual information retrieval, integration, and mining.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 49.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Doms, A., Schroeder, M.: GoPubMed: exploring PubMed with the gene ontology. Nucleic Acids Research 33, 783–786 (2005)

    Article  Google Scholar 

  2. Maglott, D., Ostell, J., Pruitt, K., Tatusova, T.: Entrez Gene: gene-centered information at NCBI. Nucleic Acids Research 39, 52–57 (2011)

    Article  Google Scholar 

  3. Pasquier, C.: Biological data integration using Semantic Web technologies. Biochimie 90, 584–594 (2008)

    Article  Google Scholar 

  4. McGarry, K., Garfield, S., Morris, N.: Recent trends in knowledge and data integration for the life sciences. Expert Systems 23(5), 330–341 (2006)

    Article  Google Scholar 

  5. Alexopoulou, D., Wächter, T., Pickersgill, L., Eyre, C., Schroeder, M.: Terminologies for text-mining; an experiment in the lipoprotein metabolism domain. BMC Bioinformatics 9(suppl. 4), S2 (2008)

    Google Scholar 

  6. Sahoo, S., Bodenreider, O., Zeng, K., Sheth, A.: An experiment in integrating large biomedical knowledge resources with RDF: Application to associating genotype and phenotype information. In: 16th International World Wide Web Conference (WWW 2007) on Health Care and Life Sciences Data Integration for the Semantic Web, Banff, Canada, pp. 8–12 (2007)

    Google Scholar 

  7. Jain, E., Bairoch, A., Duvaud, S., et al.: Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics 10, 136–136 (2009)

    Article  Google Scholar 

  8. Bairoch, A., Apweiler, R., Wu, C., et al.: The Universal Protein Resource (UniProt). Nucleic Acids Research 33, 154–159 (2005)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Chen, H. et al. (2013). Mining and Information Integration Practice for Chinese Bibliographic Database of Life Sciences. In: Perner, P. (eds) Advances in Data Mining. Applications and Theoretical Aspects. ICDM 2013. Lecture Notes in Computer Science(), vol 7987. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-39736-3_1

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-39736-3_1

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-39735-6

  • Online ISBN: 978-3-642-39736-3

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics