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Rib Detection in 3D MRI Using Dynamic Programming Based on Vesselness and Ridgeness

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Abdominal Imaging. Computation and Clinical Applications (ABD-MICCAI 2013)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 8198))

Abstract

In this paper, a fully automatic method is proposed to detect the ribs in 3D MRI. The purpose of the detection is MR-guided HIFU treatment of liver lesions, in which the ribs should be avoided. Rib segmentations are required for treatment planning and they may also be used for motion tracking during treatment. The rib detection results can serve as an initialization to automatic rib cage segmentation. The algorithm is based on surface detection and dynamic programming. First, the outer surface of the rib cage is detected. Vesselness and ridgeness are computed to highlight elongated structures. The ribs are tracked simultaneously on a 2D projection of the vesselness in the surface, using dynamic programming. Finally, the extracted lines are backprojected into the original 3D volume. Preliminary results of this algorithm are presented on data of five subjects. The results were evaluated by visual inspection of the backprojected lines in 3D. It was checked whether a line belonged to the correct rib and whether it stayed inside this rib. Overall, our algorithm was capable of detecting the ribs that were visible in the images. Testing on five volunteers yielded one failure. The remaining four results were satisfactory. Our method seems suitable to serve as initialization to a full rib cage segmentation in MRI.

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References

  1. Quesson, B., Merle, M., Köhler, M.O., Mougenot, C., Roujol, S., De Senneville, B.D., Moonen, C.T.: A Method for MRI Guidance of Intercostal High Intensity Focused Ultrasound Ablation in the Liver. Med. Phys. 37, 2533–2540 (2010)

    Article  Google Scholar 

  2. Klinder, T., Lorenz, C., von Berg, J., Dries, S.P.M., Bülow, T., Ostermann, J.: Automated Model-Based Rib Cage Segmentation and Labeling in CT Images. In: Ayache, N., Ourselin, S., Maeder, A. (eds.) MICCAI 2007, Part II. LNCS, vol. 4792, pp. 195–202. Springer, Heidelberg (2007)

    Chapter  Google Scholar 

  3. Staal, J., van Ginneken, B., Viergever, M.A.: Automatic Rib Segmentation and Labeling in Computed Tomography Scans Using a General Framework for Detection, Recognition and Segmentation of Objects in Volumetric Data. Med. Image Anal. 11, 35–46 (2007)

    Article  Google Scholar 

  4. van Ginneken, B., ter Haar Romeny, B.: Automatic Segmentation of Lung Fields in Chest Radiographs. Med. Phys. 27, 2445–2455 (2000)

    Article  Google Scholar 

  5. Xu, X.-W., Doi, K.: Image Feature Analysis for Computer-Aided Diagnosis: Accurate Determination of Ribcage Boundary in Chest Radiographs. Med. Phys. 22, 617–626 (1995)

    Article  Google Scholar 

  6. Lorigo, L.M., Faugeras, O., Grimson, W.E.L., Keriven, R., Kikinis, R.: Segmentation of Bone in Clinical Knee MRI Using Texture-Based Geodesic Active Contours. In: Wells, W.M., Colchester, A., Delp, S. (eds.) MICCAI 1998. LNCS, vol. 1496, pp. 1195–1204. Springer, Heidelberg (1998)

    Chapter  Google Scholar 

  7. Schmid, J., Magnenat-Thalmann, N.: MRI Bone Segmentation Using Deformable Models and Shape Priors. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part I. LNCS, vol. 5241, pp. 119–126. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  8. Zhang, K., Lu, W.: Automatic Human Knee Cartilage Segmentation from Multi-contrast MR Images Using Extreme Learning Machines and Discriminative Random Fields. In: Suzuki, K., Wang, F., Shen, D., Yan, P. (eds.) MLMI 2011. LNCS, vol. 7009, pp. 335–343. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

  9. Yin, Y., Zhang, X., Williams, R., Wu, X., Anderson, D.D., Sonka, M.: LOGISMOS – Layered Optimal Graph Image Segmentation of Multiple Objects and Surfaces: Cartilage Segmentation in the Knee Joint. IEEE T. Med. Imaging 29, 2023–2037 (2010)

    Article  Google Scholar 

  10. Frangi, A.F., Niessen, W.J., Vincken, K.L., Viergever, M.A.: Multiscale Vessel Enhancement Filtering. In: Wells, W.M., Colchester, A., Delp, S. (eds.) MICCAI 1998. LNCS, vol. 1496, pp. 130–137. Springer, Heidelberg (1998)

    Chapter  Google Scholar 

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Noorda, Y.H., Bartels, L.W., Viergever, M.A., Pluim, J.P.W. (2013). Rib Detection in 3D MRI Using Dynamic Programming Based on Vesselness and Ridgeness. In: Yoshida, H., Warfield, S., Vannier, M.W. (eds) Abdominal Imaging. Computation and Clinical Applications. ABD-MICCAI 2013. Lecture Notes in Computer Science, vol 8198. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-41083-3_24

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  • DOI: https://doi.org/10.1007/978-3-642-41083-3_24

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-41082-6

  • Online ISBN: 978-3-642-41083-3

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