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Risk Information Extraction and Aggregation

Experimenting on Medline Abstracts

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Algorithmic Decision Theory (ADT 2013)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 8176))

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Abstract

By exploiting advances in natural language processing, we believe that information contained in unstructured texts can be leveraged to facilitate risk modeling and decision support in healthcare. In this paper, we present our initial investigations into dependence relation extraction and aggregation into a Bayesian Belief Network structure. Our results are based on a corpus composed of MEDLINE® abstracts dealing with breast cancer risk factors.

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References

  1. Pearl, J.: Probabilistic Reasoning in Intelligent Systems: Networks of Plausible Inference. Morgan Kauffman, San Francisco (1988)

    MATH  Google Scholar 

  2. Pietzsch, J.B., Paté-Cornell, E.: Early technology assessment of new medical devices. International Journal of Technology Assessment in Health Care 24, 37–45 (2008)

    Article  Google Scholar 

  3. Deleris, L.A., Yeo, G., Siever, A., Paté-Cornell, E.: Engineering risk analysis of a hospital oxygen supply system. Medical Decision Making 26, 162–172 (2006)

    Article  Google Scholar 

  4. Egar, J.W., Musen, M.A.: Automated modeling of medical decisions. In: Proceedings of the Annual Symposium on Computer Application in Medical Care, pp. 424–428 (1993)

    Google Scholar 

  5. Zhu, A., Li, J., Leong, T.: Automated knowledge extraction for decision model construction: A data mining approach. In: AMIA 2003 Symposium Proceedings, pp. 758–762 (2003)

    Google Scholar 

  6. Sanchez-Graillet, O., Poesio, M.: Acquiring Bayesian networks from text. In: Proceedings of LREC (2004)

    Google Scholar 

  7. Clemen, R.T., Winkler, R.L.: Aggregating probability distributions. In: Edwards, W., Miles, R., von Winterfeldt, D. (eds.) Advances in Decision Analysis, pp. 154–176. Cambridge University Press, Cambridge (2007)

    Chapter  Google Scholar 

  8. Matzkevitch, I., Abramson, B.: The topological fusion of Bayes Nets. In: Dubois, D., Wellman, M.P., Ambrosio, B., Smets, P. (eds.) Proceedings of the Eighth Conference on Uncertainty in Artificial Intelligence. Morgan Kaufmann, San Francisco (1992)

    Google Scholar 

  9. Sagrado, J., Moral, S.: Qualitative combination of Bayesian networks. International Journal of Intelligent Systems 18, 237–249 (2003)

    Article  Google Scholar 

  10. Zhang, Y., Yue, K., Yue, M., Liu, W.: An approach for fusing Bayesian networks. Journal of Information and Computational Science 8, 194–201 (2011)

    Google Scholar 

  11. Rush, R., Wallace, W.A.: Elicitation of knowledge from multiple experts using network inference. IEEE Transactions on Knowledge and Data Engineering 9, 688–696 (1997)

    Article  Google Scholar 

  12. Richardson, M., Domingos, P.: Learning with knowledge from multiple experts. In: Fawcett, T., Mishra, N. (eds.) Proceedings of the Twentieth International Conference on Machine Learning. Morgan Kaufmann, Washington (2003)

    Google Scholar 

  13. Pauker, S.G., Wong, J.B.: The influence of influence diagrams in medicine. Decision Analysis 2, 238–244 (2005)

    Article  Google Scholar 

  14. Warner, H.R., Haug, P., Bouhaddou, O., Lincoln, M., Sorenson, D., Williamson, J.W., Fan, C.: Iliad as an expert consultant to teach differential diagnosis. In: Proceedings of the Annual Symposium on Computer Applications in Medical Care, vol. 154, pp. 371–376 (1988)

    Google Scholar 

  15. Hoffer, E., Feldman, M., Kim, R., Famiglietti, K., Barnett, G.: Dxplain: patterns of use of a mature expert system. In: AMIA 2005 Symposium Proceedings, pp. 321–325 (2005)

    Google Scholar 

  16. Fuller, G.: Simulconsult. Journal of Neurology, Neurosurgery and Psychiatry 76, 10 (2005), http://www.simulconsult.com

    Article  Google Scholar 

  17. van der Gaag, L.C., Renooij, S., Witteman, C.L.M., Aleman, B., Taal, B.F.: How to elicit many probabilities. In: Laskey, K.B., Prade, H. (eds.) Proceedings of the Fifteenth Conference on Uncertainty, pp. 647–654. Morgan Kaufmann Publishers, San Francisco (1999)

    Google Scholar 

  18. Chowdhary, R., Zhang, J., Liu, J.: Bayesian inference of protein-protein interactions from biological literature. Bioinformatics 25, 1536–1542 (2009)

    Article  Google Scholar 

  19. Bui, Q.C., Katrenko, S., Sloot, P.M.A.: A hybrid approach to extract protein-protein interactions. Bioinformatics 27, 259–265 (2011)

    Article  Google Scholar 

  20. Miwa, M., Sætre, R., Kim, J.-D., Tsujii, J.: Event extraction with complex event classification using rich features. Journal of Bioinformatics and Computational Biology 8, 131–146 (2010)

    Article  Google Scholar 

  21. Spirtes, P., Glymour, C., Scheines, R.: Causation, prediction, and search. Lecture Notes in Statistics. Springer (1993)

    Google Scholar 

  22. UMLS® Reference Manual [Internet]. Bethesda (MD): National Library of Medicine (US); Semantic Network, http://www.ncbi.nlm.nih.gov/books/NBK9679/

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Deleris, L., Deparis, S., Sacaleanu, B., Tounsi, L. (2013). Risk Information Extraction and Aggregation. In: Perny, P., Pirlot, M., Tsoukiàs, A. (eds) Algorithmic Decision Theory. ADT 2013. Lecture Notes in Computer Science(), vol 8176. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-41575-3_12

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  • DOI: https://doi.org/10.1007/978-3-642-41575-3_12

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-41574-6

  • Online ISBN: 978-3-642-41575-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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