Abstract
Haemophilia A is a genetic disease resulting from deficiency of factor VIII. The database of mutations causing haemophilia A has been developed by the world wide collaboration. In this study, we examined the relation between activity of factor VIII and the missense mutation by using Support Vector Machine (SVM). As parameters, we used four physical-chemical parameters of amino acids and a structural feature. As a result, we predicted the severity of haemophilia A by using SVM in A domains of factor VIII. The structural parameters influence the prediction in A domains.
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References
Bolton-Maggs, P.H.B., Pasi, K.J.: Haemophilias A and B. The Lancet 361, 1801–1809 (2003)
Furie, B., Furie, B.C.: The Molecular Basis of Blood Coagulation. Cell 53, 505–518 (1988)
Utsunomiya, M., Sakamoto, M., Furutani, H.: Regression Analysis of Amino Acid Substitutions and Factor IX Activity in Hemophilia B. Artificial Life and Robotics 13, 531–534 (2008)
Aoki, K., Yamamori, K., Sakamoto, M., Furutani, H.: Analysis of Genetic Disease Hemophilia B by Using Support Vector Machine. In: Huang, T., Zeng, Z., Li, C., Leung, C.S. (eds.) ICONIP 2012, Part IV. LNCS, vol. 7666, pp. 476–483. Springer, Heidelberg (2012)
Gitschier, J., Wood, W.I., Goralka, T.M., et al.: Characterization of the Human Factor VIII Gene. Nature 312, 326–330 (1984)
Kemball-Cook, G.: The Haemophilia A Mutation, Structure, Test and Resource Site (HAMSTeRS), http://hadb.org.uk/ (February 11, 2013) (updated)
Jachims, T.: SVMlight Version 6.02 (2008), http://svmlight.joachims.org/
Schölkopf, B., Burges, C.J.C., Smola, A.J.: Advances in Kernel Methods. The MIT Press, London (1999)
Schölkopf, B., Tsuda, K., Vert, J.P.: Kernel Methods in Computational Biology. A Bradford Book. The MIT Press, London (2004)
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Aoki, K., Yamamori, K., Sakamoto, M., Furutani, H. (2013). SVM Analysis of Haemophilia A by Using Protein Structure. In: Lee, M., Hirose, A., Hou, ZG., Kil, R.M. (eds) Neural Information Processing. ICONIP 2013. Lecture Notes in Computer Science, vol 8227. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-42042-9_84
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DOI: https://doi.org/10.1007/978-3-642-42042-9_84
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