Skip to main content

Abstract

The knowledge of left atrial (LA) anatomy is important for atrial fibrillation ablation guidance. More recently, LA anatomical models have been used for cardiac biophysical modelling. Segmentation of the LA from Magnetic Resonance Imaging (MRI) and Computed Tomography (CT) images is a complex problem. We aimed at evaluating current algorithms that address this problem by creating a unified benchmarking framework through the mechanism of a challenge, the Left Atrial Segmentation Challenge 2013 (LASC’13). Thirty MRI and thirty CT datasets were provided to participants for segmentation. Ten data sets for each modality were provided with expert manual segmentations for algorithm training. The other 20 data sets per modality were used for evaluation. The datasets were provided by King’s College London and Philips Technologie GmbH. Each participant segmented the LA including a short part of the LA appendage trunk plus the proximal parts of the pulmonary veins. Details on the evaluation framework and the results obtained in this challenge are presented in this manuscript. The results showed that methodologies combining statistical models with region growing approaches were the most appropriate to handle the proposed task.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 49.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Haïssaguerre, M., Jaïs, P., Shah, D.C., Takahashi, A., Hocini, M., Quiniou, G., Garrigue, S., Le Mouroux, A., Le Métayer, P., Clémenty, J.: Spontaneous initiation of atrial fibrillation by ectopic beats originating in the pulmonary veins. N. Engl. J. Med. 339(10), 659–666 (1998)

    Article  Google Scholar 

  2. Calkins, H., Kuck, K.H., Cappato, R., Brugada, J., Camm, A.J., Chen, S.A., Crijns, H.J.G., Damiano, J.R.J., Davies, D.W., DiMarco, J., Edgerton, J., Ellenbogen, K., Ezekowitz, M.D., Haines, D.E., Haissaguerre, M., Hindricks, G., Iesaka, Y., Jackman, W., Jalife, J., Jais, P., Kalman, J., Keane, D., Kim, Y.H., Kirchhof, P., Klein, G., Kottkamp, H., Kumagai, K., Lindsay, B.D., Mansour, M., Marchlinski, F.E., McCarthy, P.M., Mont, J.L., Morady, F., Nademanee, K., Nakagawa, H., Natale, A., Nattel, S., Packer, D.L., Pappone, C., Prystowsky, E., Raviele, A., Reddy, V., Ruskin, J.N., Shemin, R.J., Tsao, H.M., Wilber, D.: 2012 hrs/ehra/ecas expert consensus statement on catheter and surgical ablation of atrial fibrillation: recommendations for patient selection, procedural techniques, patient management and follow-up, definitions, endpoints, and research trial design. Europace 14(4), 528–606 (2012)

    Google Scholar 

  3. Aslanidi, O.V., Colman, M.A., Stott, J., Dobrzynski, H., Boyett, M.R., Holden, A.V., Zhang, H.: 3d virtual human atria: A computational platform for studying clinical atrial fibrillation. Prog. Biophys. Mol. Biol. 107(1), 156–168 (2011)

    Article  Google Scholar 

  4. Kato, R., Lickfett, L., Meininger, G., Dickfeld, T., Wu, R., Juang, G., Angkeow, P., LaCorte, J., Bluemke, D., Berger, R., Halperin, H.R., Calkins, H.: Pulmonary vein anatomy in patients undergoing catheter ablation of atrial fibrillation: lessons learned by use of magnetic resonance imaging. Circulation 107(15), 2004–2010 (2003)

    Article  Google Scholar 

  5. Uribe, S., Muthurangu, V., Boubertakh, R., Schaeffter, T., Razavi, R., Hill, D.L.G., Hansen, M.S.: Whole-heart cine mri using real-time respiratory self-gating. Magn. Reson. Med. 57(3), 606–613 (2007)

    Article  Google Scholar 

  6. Antiga, L., Steinman, D.A.: Robust and objective decomposition and mapping of bifurcating vessels. IEEE Trans. Med. Imaging 23(6), 704–713 (2004)

    Article  Google Scholar 

  7. Peters, J., Ecabert, O., Meyer, C., Schramm, H., Kneser, R., Groth, A., Weese, J.: Automatic whole heart segmentation in static magnetic resonance image volumes. In: Ayache, N., Ourselin, S., Maeder, A. (eds.) MICCAI 2007, Part II. LNCS, vol. 4792, pp. 402–410. Springer, Heidelberg (2007)

    Chapter  Google Scholar 

  8. Ecabert, O., Peters, J., Schramm, H., Lorenz, C., von Berg, J., Walker, M.J., Vembar, M., Olszewski, M.E., Subramanyan, K., Lavi, G., Weese, J.: Automatic model-based segmentation of the heart in CT images. IEEE Trans. Med. Imaging 27(9), 1189–1201 (2008)

    Google Scholar 

  9. Ecabert, O., Peters, J., Walker, M.J., Ivanc, T., Lorenz, C., von Berg, J., Lessick, J., Vembar, M., Weese, J.: Segmentation of the heart and great vessels in CT images using a model-based adaptation framework. Med. Image Anal. 15(6), 863–876 (2011)

    Article  Google Scholar 

  10. Ballard, D.H.: Generalizing the Hough transform to detect arbitrary shapes. Pattern Recogn. 13(2), 111–122 (1981)

    Article  MATH  Google Scholar 

  11. Yushkevich, P.A., Piven, J., Hazlett, H.C., Smith, R.G., Ho, S., Gee, J.C., Gerig, G.: User-guided 3d active contour segmentation of anatomical structures: significantly improved efficiency and reliability. Neuroimage 31(3), 1116–1128 (2006)

    Article  Google Scholar 

  12. Alliez, P., Cohen-Steiner, D., Devillers, O., Lévy, B., Desbrun, M.: Anisotropic polygonal remeshing. ACM Transactions on Graphics 22, 485–493 (2003); SIGGRAPH 2003 Conference Proceedings

    Google Scholar 

  13. Cohen-Steiner, D., Morvan, J.M.: Restricted delaunay triangulations and normal cycle. In: 19th Annual Symposium on Computational Geometry, pp. 237–246 (2003)

    Google Scholar 

  14. Piccinelli, M., Veneziani, A., Steinman, D.A., Remuzzi, A., Antiga, L.: A framework for geometric analysis of vascular structures: application to cerebral aneurysms. IEEE Trans. Med. Imaging 28(8), 1141–1155 (2009)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Tobon-Gomez, C. et al. (2014). Left Atrial Segmentation Challenge: A Unified Benchmarking Framework. In: Camara, O., Mansi, T., Pop, M., Rhode, K., Sermesant, M., Young, A. (eds) Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges. STACOM 2013. Lecture Notes in Computer Science, vol 8330. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-54268-8_1

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-54268-8_1

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-54267-1

  • Online ISBN: 978-3-642-54268-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics