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Ontology-Based Modelling of Web Content: Example Leipzig Health Atlas

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Abstract

The realisation of a complex web portal, including the modelling of content, is a challenging process. The contents describe different interconnected entities that form a complex structure. The entities and their relations have to be systematically analysed, and the content has to be specified and integrated into a content management system (CMS). Ontologies provide a suitable solution for modelling and specifying complex entities and their relations. However, the functionality for automated import of ontologies is not available in current content management systems.

In order to describe the content of a web portal, we developed an ontology. Based on this ontology, we implemented a pipeline that allows the specification of the portal’s content and its import into the CMS Drupal. Our method is generic. It enables the development of web portals with the focus on a suitable representation of structured knowledge (entities, their properties and relations). Furthermore, it makes it possible to represent existing ontologies in such a way that their content can be understood by users without knowledge of ontologies and their semantics.

Our approach has successfully been applied in building the LHA (Leipzig Health Atlas) portal, which provides access to metadata, data, publications and methods from various research projects at the University of Leipzig.

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Notes

  1. 1.

    Systems Medicine is the implementation of Systems Biology approaches in medical concepts, research and practice. […]” (https://www.casym.eu/what-is-systems-medicine/).

  2. 2.

    Funded by the German Ministry of Education and Research (reference number: 031L0026, program: i:DSem – Integrative Datensemantik in der Systemmedizin).

References

  1. Horgan RP, Kenny LC (2011) “Omic” technologies: genomics, transcriptomics, proteomics and metabolomics. Obstet Gynaecol 13(3):189–195

    Google Scholar 

  2. ISO 14721:2012. Space data and information transfer systems – Open archival information system (OAIS) – Reference model. https://www.iso.org/standard/57284.html

  3. MEDLINE/PubMed XML data elements. https://www.nlm.nih.gov/bsd/licensee/data_elements_doc.html

  4. Gene Expression Omnibus (GEO). https://www.ncbi.nlm.nih.gov/geo/

  5. Hanauer DA, Rhodes DR, Sinha-Kumar C, Chinnaiyan AM (2007) Bioinformatics approaches in the study of cancer. Curr Mol Med 7(1):133–141(9)

    Article  Google Scholar 

  6. Cerami E, Gao J, Dogrusoz U, Gross BE, Sumer SO, Aksoy BA, Jacobsen A, Byrne CJ, Heuer ML, Larsson E, Antipin Y, Reva B, Goldberg AP, Sander C, Schultz N (2012) The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Am Assoc Cancer Res. https://doi.org/10.1158/2159-8290.CD-12-0095

  7. Grossman RL, Heath AP, Ferretti V, Varmus HE, Lowy DR, Kibbe WA, Staudt LM (2016) Toward a shared vision for cancer genomic data. N Engl J Med 375:1109–1112. https://doi.org/10.1056/NEJMp1607591

    Article  Google Scholar 

  8. Hoehndorf R, Ngomo A-CN, Herre H (2009) Developing consistent and modular software models with ontologies. In: Fujita H, Marik V (eds) New trends in software methodologies, tools and techniques: proceedings of the Eighth SoMeT_09. Volume 199. IOS Press, pp 399–412. [Frontiers in Artificial Intelligence and Applications]

    Google Scholar 

  9. Herre H, Heller B, Burek P, Hoehndorf R, Loebe F, Michalek H (2006) General formal ontology (GFO): a foundational ontology integrating objects and processes. Part I: basic principles (Version 1.0). Onto-Med report. Research Group Ontologies in Medicine (Onto-Med), University of Leipzig

    Google Scholar 

  10. Herre H (2010) General formal ontology (GFO): a foundational ontology for conceptual modelling. In: Poli R, Healy M, Kameas A (eds) Theory and applications of ontology: computer applications. Springer, Dordrecht, pp 297–345

    Chapter  Google Scholar 

  11. Beger C, Uciteli A, Herre H (2017) Light-weighted automatic import of standardized ontologies into the content management system Drupal. Stud Health Technol Inform 243:170–174

    Google Scholar 

  12. Humfrey N. RDF library for PHP. http://www.easyrdf.org/

  13. Leipzig Health Atlas (LHA). https://www.health-atlas.de/

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Correspondence to Alexandr Uciteli .

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Uciteli, A., Beger, C., Rillich, K., Meineke, F.A., Loeffler, M., Herre, H. (2018). Ontology-Based Modelling of Web Content: Example Leipzig Health Atlas. In: Hoppe, T., Humm, B., Reibold, A. (eds) Semantic Applications. Springer Vieweg, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-55433-3_9

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  • DOI: https://doi.org/10.1007/978-3-662-55433-3_9

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  • Publisher Name: Springer Vieweg, Berlin, Heidelberg

  • Print ISBN: 978-3-662-55432-6

  • Online ISBN: 978-3-662-55433-3

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