Skip to main content

Automatic Segmentation of Region of Interests in MR Images Using Saliency Information and Active Contours

  • Conference paper
  • First Online:

Part of the book series: Lecture Notes in Electrical Engineering ((LNEE,volume 215))

Abstract

Magnetic resonance imaging (MRI) is the most clinically used and gifted modality to identify brain abnormalities in individuals who might be at risk for brain cancer. To date, automated brain tumor segmentation from MRI modalities remains a sensitive, computationally expensive, and a demanding task. This paper presents an automated and robust segmentation method to enable investigators to make successful diagnosis and planning of radiosurgery by reducing the risk factor and study duration. The proposed system consists of following steps: (1) remove the non-brain part from MRI, (2) estimate saliency map of MRI, (3) use the salient region (tumor) as an identification marker and segment the salient object by finding the “optimal” closed contour around the tumor. The system has been tested on real patient images with excellent results. The qualitative and quantitative evaluations by comparing with ground truths and with other existing approaches demonstrate the effectiveness of the proposed method.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  1. http://www.braintumor.org/

  2. Ejaz N, Tariq TB, Baik SW (2012) Adaptive key frame extraction for video summarization using an aggregation mechanism. J Vis Commun Image Represent 23(7):1031–1040

    Google Scholar 

  3. Cabezas M, Oliver A, Lladó X, Freixenet J, Cuadra MB (2011) A review of atlas-based segmentation for magnetic resonance brain images. J Comput Methods Programs Biomed 104(3):e158–e177

    Article  Google Scholar 

  4. Boldrey E (1949) A survey of brain tumors for the general practitioner of surgery. Am J Surg 78(3):340–346

    Article  Google Scholar 

  5. Wang X, Pang Q (2011) The research on segmentation of complex object. Int Congr Image Signal Process (CISP) 3:1177–1281

    Google Scholar 

  6. Angelini ED, Clatz O, Emmanuel M, Konukoglu E, Capelle L, Duffau H (2007) Glioma dynamics and computational models: a review of segmentation, registration, and in silico growth algorithms and their clinical applications. J Curr Med Imaging Rev 3(4):262–276(15)

    Google Scholar 

  7. Hamamci A, Kucuk N, Karaman K, Engin K, Unal G (2012) Tumor-cut: segmentation of brain tumors on contrast enhanced MR images for radiosurgery applications. IEEE Trans Med Imaging 31(3):798–804

    Article  Google Scholar 

  8. Vezhnevets V, Konouchine V (2005) “GrowCut”—interactive multi-label N-D image segmentation by cellular automata. Presented at the Graph-icon, Novosibirsk Akademgorodok

    Google Scholar 

  9. Jaffer A, Zia S, Latif G, Mirza AM, Mehmood I, Ejaz N, Baik SW (2012) Anisotropic diffusion based brain MRI segmentation and 3D reconstruction. Int J Comput Intell Syst 5(3):494–504

    Google Scholar 

  10. Boesen K, Rehm K, Schaper K, Stoltzner S, Woods R, Lüders E, Rottenberg D (2004) Quantitative comparison of four brain extraction algorithms. J Neuroimage 22(3):1255–1261

    Google Scholar 

  11. Blackwell HR (1946) Contrast thresholds of the human eye. J Opt Soc Am (1917–1983) 36(11):624–632

    Google Scholar 

  12. Wang XT, Wu JT (2012) Active contours for specific target detection. Electron Lett 48(2):83–84

    Article  Google Scholar 

  13. Harvard Medical School http://med.harvard.edu/AANLIB/

  14. Pakistan Institute of Medical Sciences http://www.pims.gov.pk/radiology.htm

Download references

Acknowledgments

This research is supported by: (1) The Industrial Strategic technology development program, 10041772, (The Development of an Adaptive Mixed-Reality Space based on Interactive Architecture) funded by the MKE (Ministry of Knowledge Economy, Korea) and, (2) The Ministry of Knowledge Economy (MKE), Korea, under IT/SW Creative research program supervised by the National IT Industry Promotion Agency (NIPA)” (NIPA-2012-H0502-12-1013).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sung Wook Baik .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media Dordrecht

About this paper

Cite this paper

Mehmood, I., Baik, R., Baik, S.W. (2013). Automatic Segmentation of Region of Interests in MR Images Using Saliency Information and Active Contours. In: Kim, K., Chung, KY. (eds) IT Convergence and Security 2012. Lecture Notes in Electrical Engineering, vol 215. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-5860-5_64

Download citation

  • DOI: https://doi.org/10.1007/978-94-007-5860-5_64

  • Published:

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-007-5859-9

  • Online ISBN: 978-94-007-5860-5

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics