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Building of Chemical Reaction Modules and Design of Chaotic Oscillatory System Based on DNA Strand Displacement

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Bio-inspired Computing: Theories and Applications (BIC-TA 2019)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 1160))

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Abstract

DNA strand displacement as a new type of technology has provided different ways to build complex circuits. Research on chemical kinetics is helpful for exploiting the inherent potential property of biomolecular systems. It is common practice to use fluorophore and dark quencher to detect the luminous intensity of DNA chain, so as to determine the concentration of DNA chain. The luminous intensity of fluorophore and dark quencher is positively correlated with the concentration of DNA chain. In this study, six different chemical reaction modules have been designed and been demonstrated validity. The classical theory of chemical reaction networks can be used to describe the biological processes by mathematical modeling. Based on that, we have proposed a 3-variable chaotic oscillatory system and simulated by matlab. The result of simulation is convincing. A 3-variable chaotic oscillatory system as a bridge paves way to make some connection between chaotic oscillatory system and synchronized system in the future study.

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Acknowledgements

This work was supported in part by the National Key R and D Program of China for International S and T Cooperation Projects (2017YFE0103900), in part by the Joint Funds of the National Natural Science Foundation of China (U1804262), in part by the State Key Program of National Natural Science of China under Grant 61632002, in part by the National Natural Science of China under Grant 61603348, Grant 61775198, Grant 61603347, and Grant 61572446, in part by the Foundation of Young Key Teachers from University of Henan Province (2018GGJS092), and in part by the Youth Talent Lifting Project of Henan Province (2018HYTP016) and Henan Province University Science and Technology Innovation Talent Support Plan under Grant 20HASTIT027.

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Authors and Affiliations

  1. Henan Key Lab of Information-Based Electrical Appliances, Zhengzhou University of Light Industry, Zhenzhou, 450002, China

    Zhi Li, Yanfeng Wang & Junwei Sun

  2. School of Electrical and Information Engineering, Zhengzhou University of Light Industry, Zhenzhou, 450002, China

    Zhi Li, Yanfeng Wang & Junwei Sun

Authors
  1. Zhi Li
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  2. Yanfeng Wang
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  3. Junwei Sun
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Corresponding author

Correspondence to Junwei Sun .

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Editors and Affiliations

  1. Huazhong University of Science and Technology, Wuhan, China

    Linqiang Pan

  2. Zhengzhou University, Zhengzhou, China

    Jing Liang

  3. Zhongyuan University of Technology, Zhengzhou, China

    Boyang Qu

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Li, Z., Wang, Y., Sun, J. (2020). Building of Chemical Reaction Modules and Design of Chaotic Oscillatory System Based on DNA Strand Displacement. In: Pan, L., Liang, J., Qu, B. (eds) Bio-inspired Computing: Theories and Applications. BIC-TA 2019. Communications in Computer and Information Science, vol 1160. Springer, Singapore. https://doi.org/10.1007/978-981-15-3415-7_13

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  • DOI: https://doi.org/10.1007/978-981-15-3415-7_13

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  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-15-3414-0

  • Online ISBN: 978-981-15-3415-7

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