Skip to main content

Medical Transcriptions and UMLS-Based Disease Inference and Risk Assessment Using Machine Learning

  • Conference paper
  • First Online:
Evolution in Computational Intelligence

Part of the book series: Advances in Intelligent Systems and Computing ((AISC,volume 1176))

Abstract

An extensive set of applications and approaches for automatic disease inference with risk assessment system in medical fields objected to improve the efficacy and efficiency of patient care. Recent research studies are getting done in the area to predict patients’ future health conditions based on the medical records, particularly full clinical texts, medical transcriptions, clinical measurements, or medical codes. Healthcare data are highly complex, multi-dimensional, and heterogeneous in nature which are the key challenges. In this paper, a system has been proposed for disease inference by extracting symptoms and mapping the metadata using Unified Medical Language System (UMLS) to have the disease code. The symptoms and metadata are extracted from medical transcripts using natural language processing (NLP) and the extracted information has been categorized into chief complaints, present illness, and past history. These extracted symptoms are mapped using UMLS for disease code inference. Based on the disease code, the risk classifier classifies the level of risk. The proposed system based on deep learning and UMLS for disease inference resulted with significant improvement in accuracy.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Guo, D., Li, M., Yu, Y., Li, Y., Duan, G., Wu, F.X., Wang, J.: Disease inference with symptom extraction and bidirectional recurrent neural network. In: IEEE International Conference on Bioinformatics and Biomedicine (BIBM), IEEE, pp. 864–868 (2018)

    Google Scholar 

  2. Fakoor, R., Ladhak, F., Nazi, A., Huber, M.: Using deep learning to enhance cancer diagnosis and classification. In: Proceedings of the International Conference on Machine Learning, Vol. 28. ACM, New York, USA (2013)

    Google Scholar 

  3. Shickel, B., Tighe, P.J., Bihorac, A., Rashidi, P.: Deep EHR: a survey of recent advances in deep learning techniques for electronic health record (EHR) analysis. IEEE J. Biomed. Health. Inf. 22(5), 1589–1604 (2014)

    Google Scholar 

  4. Ma, F., Chitta, R., Zhou, J., You, Q., Sun, T., Gao, J.: Dipole: diagnosis prediction in healthcare via attention-based bidirectional recurrent neural networks. In: Proceedings of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 1903–1911 (2017)

    Google Scholar 

  5. Zeng, M., Li, M., Fei, Z., Wu, F., Li, Y., Pan, Y., Wang, J.: A deep learning framework for identifying essential proteins by integrating multiple types of biological information. In: IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019)

    Google Scholar 

  6. Yu, Y., Li, M., Liu, L., Li, Y., Wang, J.: Clinical big data and deep learning: applications, challenges, and future outlooks. Big Data Min. Anal. 2(4), 288–305 (2019)

    Google Scholar 

  7. Fang, R., Pouyanfar, S., Yang, Y., Chen, S.C., Iyengar, S.S.: Computational health informatics in the big data age: a survey. ACM Comput. Surv. (CSUR) 49(1), 1–36 (2016)

    Google Scholar 

  8. https://www.kaggle.com/datasets

  9. UMLS system: https://www.nlm.nih.gov/research/umls/index.html

  10. Choi, E., Bahadori, M.T., Schuetz, A., Stewart, W.F., Sun, J.: Doctor ai: predicting clinical events via recurrent neural networks. In: Machine Learning for Healthcare Conference, pp. 301–318 (2016, December)

    Google Scholar 

  11. Li, M., Fei, Z., Zeng, M., Wu, F.X., Li, Y., Pan, Y., Wang, J.: Automated ICD-9 coding via a deep learning approach. IEEE/ACM Trans. Comput. Biol. Bioinf. 16(4), 1193–1202 (2018)

    Google Scholar 

  12. Martin, L., Battistelli, D., Charnois, T.: Symptom recognition issue. In: 13th Workshop on Biomedical Natural Language Processing (BioNLP), pp. 107–111 (2014)

    Google Scholar 

Download references

Acknowledgements

The infrastructure facility provided by Department of Science and Technology, Government of India (DST-FIST) was used while implementing the solution model. The facility and support were provided by IBM for the execution of this study.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Thamizharuvi Arikrishnan .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Arikrishnan, T., Swamynathan, S. (2021). Medical Transcriptions and UMLS-Based Disease Inference and Risk Assessment Using Machine Learning. In: Bhateja, V., Peng, SL., Satapathy, S.C., Zhang, YD. (eds) Evolution in Computational Intelligence. Advances in Intelligent Systems and Computing, vol 1176. Springer, Singapore. https://doi.org/10.1007/978-981-15-5788-0_49

Download citation

Publish with us

Policies and ethics