Abstract
Dimensionality reduction plays an important role in neural signal analysis. Most dimensionality reduction methods can effectively describe the majority of the variance of the data, such as principal component analysis (PCA) and locally linear embedding (LLE). However, they may not be able to capture useful information given a specific task, since these approaches are unsupervised. This study proposes an autoencoder-based approach that incorporates task-related information as strong guidance to the dimensionality reduction process, such that the low dimensional representations can better reflect information directly related to the task. Experimental results show that the proposed method is capable of finding task-related features of the neural population effectively.
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References
Afshar, A., Santhanam, G., Byron, M.Y., Ryu, S.I., Sahani, M., Shenoy, K.V.: Single-trial neural correlates of arm movement preparation. Neuron 71(3), 555–564 (2011)
Aoi, M., Pillow, J.W.: Model-based targeted dimensionality reduction for neuronal population data. In: Advances in Neural Information Processing Systems, pp. 6690–6699 (2018)
Ba, J.L., Kiros, J.R., Hinton, G.E.: Layer normalization. arXiv preprint arXiv:1607.06450 (2016)
Bengio, Y., CA, M.: RMSProp and equilibrated adaptive learning rates for nonconvex optimization. Corr abs/1502.04390 (2015)
Bengio, Y., Lamblin, P., Popovici, D., Larochelle, H.: Greedy layer-wise training of deep networks. In: Advances in Neural Information Processing Systems, pp. 153–160 (2007)
Bengio, Y., Simard, P., Frasconi, P.: Learning long-term dependencies with gradient descent is difficult. IEEE Trans. Neural Netw. 5(2), 157–166 (1994)
Briggman, K.L., Abarbanel, H.D., Kristan, W.B.: Optical imaging of neuronal populations during decision-making. Science 307(5711), 896–901 (2005)
Cunningham, J.P., Byron, M.Y.: Dimensionality reduction for large-scale neural recordings. Nature Neurosci. 17(11), 1500–1509 (2014)
Durstewitz, D., Vittoz, N.M., Floresco, S.B., Seamans, J.K.: Abrupt transitions between prefrontal neural ensemble states accompany behavioral transitions during rule learning. Neuron 66(3), 438–448 (2010)
Gibson, S., Judy, J.W., Markovic, D.: Technology-aware algorithm design for neural spike detection, feature extraction, and dimensionality reduction. IEEE Trans. Neural Syst. Rehabil. Eng. 18(5), 469–478 (2010)
Hand, D.J.: Kernel Discriminant Analysis, p. 264. Wiley, New York (1982)
He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)
Hinton, G.E., Salakhutdinov, R.R.: Reducing the dimensionality of data with neural networks. Science 313(5786), 504–507 (2006)
Hochberg, L.R., et al.: Reach and grasp by people with tetraplegia using a neurally controlled robotic arm. Nature 485(7398), 372–375 (2012)
Hochberg, L.R., et al.: Neuronal ensemble control of prosthetic devices by a human with tetraplegia. Nature 442(7099), 164–171 (2006)
Hochreiter, S., Schmidhuber, J.: Long short-term memory. Neural Comput. 9(8), 1735–1780 (1997)
Ioffe, S., Szegedy, C.: Batch normalization: accelerating deep network training by reducing internal covariate shift. arXiv preprint arXiv:1502.03167 (2015)
Jackson, A., Mavoori, J., Fetz, E.E.: Long-term motor cortex plasticity induced by an electronic neural implant. Nature 444(7115), 56–60 (2006)
Jolliffe, I.T., Cadima, J.: Principal component analysis: a review and recent developments. Philos. Trans. R. Soc. A Math. Phys. Eng. Sci. 374(2065), 20150202 (2016)
Kingma, D.P., Ba, J.: Adam: a method for stochastic optimization. arXiv preprint arXiv:1412.6980 (2014)
Kingma, D.P., Welling, M.: Auto-encoding variational bayes. arXiv preprint arXiv:1312.6114 (2013)
Kobak, D., et al.: Demixed principal component analysis of neural population data. Elife 5, e10989 (2016)
LeCun, Y., et al.: Handwritten digit recognition with a back-propagation network. In: Advances in Neural Information Processing Systems, pp. 396–404 (1990)
Lian, Q., Qi, Y., Pan, G., Wang, Y.: Learning graph in graph convolutional neural networks for robust seizure prediction. J. Neural Eng. 17, 035004 (2020)
Mante, V., Sussillo, D., Shenoy, K.V., Newsome, W.T.: Context-dependent computation by recurrent dynamics in prefrontal cortex. Nature 503(7474), 78–84 (2013)
McLachlan, G.J.: Discriminant Analysis and Statistical Pattern Recognition, vol. 544. Wiley, New York (2004)
Mikolov, T., Karafiát, M., Burget, L., Černocky, J., Khudanpur, S.: Recurrent neural network based language model. In: Eleventh Annual Conference of the International Speech Communication Association, pp. 1045–1048 (2010)
Nair, V., Hinton, G.E.: Rectified linear units improve restricted Boltzmann machines. In: ICML (2010)
Nordhausen, C.T., Maynard, E.M., Normann, R.A.: Single unit recording capabilities of a 100 microelectrode array. Brain Res. 726(1–2), 129–140 (1996)
Pan, G., et al.: Rapid decoding of hand gestures in electrocorticography using recurrent neural networks. Front. Neurosci. 12, 555 (2018)
Pang, R., Lansdell, B.J., Fairhall, A.L.: Dimensionality reduction in neuroscience. Current Biol. 26(14), R656–R660 (2016)
Panzeri, S., Macke, J.H., Gross, J., Kayser, C.: Neural population coding: combining insights from microscopic and mass signals. Trends Cogn. Sci. 19(3), 162–172 (2015)
Qi, Y., Liu, B., Wang, Y., Pan, G.: Dynamic ensemble modeling approach to nonstationary neural decoding in brain-computer interfaces. In: Advances in Neural Information Processing Systems, pp. 6089–6098 (2019)
Rousseeuw, P.J.: Silhouettes: a graphical aid to the interpretation and validation of cluster analysis. J. Comput. Appl. Math. 20, 53–65 (1987)
Roweis, S., Hinton, G., Salakhutdinov, R.: Neighbourhood component analysis. Adv. Neural Inf. Process. Syst. (NIPS) 17, 513–520 (2004)
Roweis, S.T., Saul, L.K.: Nonlinear dimensionality reduction by locally linear embedding. Science 290(5500), 2323–2326 (2000)
Rumelhart, D.E., Hinton, G.E., Williams, R.J.: Learning internal representations by error propagation. California Univ., San Diego, La Jolla, Inst. for Cognitive Science, Technical report (1985)
Seidemann, E., Meilijson, I., Abeles, M., Bergman, H., Vaadia, E.: Simultaneously recorded single units in the frontal cortex go through sequences of discrete and stable states in monkeys performing a delayed localization task. J. Neurosci. 16(2), 752–768 (1996)
Suner, S., Fellows, M.R., Vargas-Irwin, C., Nakata, G.K., Donoghue, J.P.: Reliability of signals from a chronically implanted, silicon-based electrode array in non-human primate primary motor cortex. IEEE Trans. Neural Syst. Rehabil. Eng. 13(4), 524–541 (2005)
Tenenbaum, J.B., De Silva, V., Langford, J.C.: A global geometric framework for nonlinear dimensionality reduction. Science 290(5500), 2319–2323 (2000)
Van Der Maaten, L., Postma, E., Van den Herik, J.: Dimensionality reduction: a comparative. J. Mach. Learn. Res. 10(66–71), 13 (2009)
Vincent, P., Larochelle, H., Bengio, Y., Manzagol, P.A.: Extracting and composing robust features with denoising autoencoders. In: Proceedings of the 25th International Conference on Machine Learning, pp. 1096–1103 (2008)
Vincent, P., Larochelle, H., Lajoie, I., Bengio, Y., Manzagol, P.A., Bottou, L.: Stacked denoising autoencoders: learning useful representations in a deep network with a local denoising criterion. J. Mach. Learn. Res. 11(12), 3371–3408 (2010)
Zhou, L., et al.: Decoding motor cortical activities of monkey: a dataset. In: 2014 International Joint Conference on Neural Networks (IJCNN), pp. 3865–3870. IEEE (2014)
Acknowledgments
This work was partly supported by the grants from National Key R&D Program of China (2018YFA0701400), National Natural Science Foundation of China (No. 61673340), Zhejiang Provincial Natural Science Foundation of China (LZ17F030001), Fundamental Research Funds for the Central Universities (2020FZZX001-05), and the Zhejiang Lab (2019KE0AD01).
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Lian, Q., Liu, Y., Zhao, Y., Qi, Y. (2021). Incorporating Task-Related Information in Dimensionality Reduction of Neural Population Using Autoencoders. In: Wang, Y. (eds) Human Brain and Artificial Intelligence. HBAI 2021. Communications in Computer and Information Science, vol 1369. Springer, Singapore. https://doi.org/10.1007/978-981-16-1288-6_4
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DOI: https://doi.org/10.1007/978-981-16-1288-6_4
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