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A Span-Based Joint Model for Measurable Quantitative Information Extraction

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Neural Computing for Advanced Applications (NCAA 2022)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 1638))

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Abstract

As a set of essential information related to the quantity of objects, measurable quantitative information widely exists in various texts. This paper proposes a new span-based joint model with lexicon enhanced BERT for measurable quantitative information extraction, which incorporates both measurable quantitative information recognition and association within one model. A standard dataset containing 3,106 Chinese text sentences and a clinical dataset containing 1,359 Chinese electronic medical records are used for evaluation. Experiment results show that our joint model achieves an F1-score of 97.44% on the clinical dataset and outperforms baseline models by an improvement of 3.2% for recognition and 5.1% for association in F1-score on the standard dataset.

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Notes

  1. 1.

    https://huggingface.co/bert-base-chinese.

  2. 2.

    https://www.cnis.ac.cn/pcindex/

References

  1. Hao, T., We, Y., Qiang, J., Wang, H., Lee, K.: The representation and extraction of quantitative information. In: Proceedings of the 13th Joint ISO-ACL Workshop on Interoperable Semantic Annotation (ISA-13) (2017)

    Google Scholar 

  2. Maguire, A., Johnson, M.E., Denning, D.W., Ferreira, G.L.C., Cassidy, A.: Identifying rare diseases using electronic medical records: the example of allergic bronchopulmonary aspergillosis. Pharmacoepidemiol. Drug Saf. 26(7), 785–791 (2017)

    Article  Google Scholar 

  3. Frost, D.W., Vembu, S., Wang, J., Tu, K., Morris, Q., Abrams, H.B.: Using the electronic medical record to identify patients at high risk for frequent emergency department visits and high system costs. Am. J. Med. 130(5), 601-e17 (2017)

    Article  Google Scholar 

  4. Lossio-Ventura, J.A., et al.: Towards an obesity-cancer knowledge base: Biomedical entity identification and relation detection. In: 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 1081–1088 (2016)

    Google Scholar 

  5. Liu, S., Nie, W., Gao, D., Yang, H., Yan, J., Hao, T.: Clinical quantitative information recognition and entity-quantity association from Chinese electronic medical records. Int. J. Mach. Learn. Cybern. 12(1), 117–130 (2020). https://doi.org/10.1007/s13042-020-01160-0

    Article  Google Scholar 

  6. Hao, T., Wang, H.: Semantic annotation framework (SemAF)—Part 11: Measurable Quantitative Information (MQI). ISO/DIS 24617-11, International Organization for Standardization (2021)

    Google Scholar 

  7. Wong, K.F., Li, W.J., Xu, R.F., Zhang, Z.S.: Introduction to Chinese natural language processing. Synt. Lect. Hum. Lang. Technol. 2(1), 1–148 (2009)

    Google Scholar 

  8. Zheng, S., Wang, F., Bao, H., Hao, Y., Zhou, P., Xu, B.: Joint extraction of entities and relations based on a novel tagging scheme. arXiv preprint arXiv:1706.05075 (2017)

  9. Li, Q., Ji, H.: Incremental joint extraction of entity mentions and relations. In: Proceedings of the 52rd Annual Meeting of the Association for Computational Linguistics, pp. 402–412 (2014)

    Google Scholar 

  10. Hao, T., Liu, H., Weng, C.: Valx: a system for extracting and structuring numeric lab test comparison statements from text. Methods Inf. Med. 55(03), 266–275 (2016)

    Article  Google Scholar 

  11. Liu, S., Pan, X., Chen, B., Gao, D., Hao, T.: An automated approach for clinical quantitative information extraction from Chinese electronic medical records. In: Siuly, S., Lee, I., Huang, Z., Zhou, R., Wang, H., Xiang, W. (eds.) HIS 2018. LNCS, vol. 11148, pp. 98–109. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-01078-2_9

    Chapter  Google Scholar 

  12. Hao, T., Pan, X., Gu, Z., Qu, Y., Weng, H.: A pattern learning-based method for temporal expression extraction and normalization from multi-lingual heterogeneous clinical texts. BMC Med. Inform. Decis. Mak. 18(1), 15–25 (2018)

    Article  Google Scholar 

  13. Tang, B., Cao, H., Wu, Y., Jiang, M., Xu, H.: Clinical entity recognition using structural support vector machines with rich features. In: Proceedings of the ACM Sixth International Workshop on Data and Text Mining in Biomedical Informatics, pp. 13–20 (2012)

    Google Scholar 

  14. Gruss, R., Abrahams, A.S., Fan, W., Wang, G.A.: By the numbers: the magic of numerical intelligence in text analytic systems. Decis. Support Syst. 113, 86–98 (2018)

    Article  Google Scholar 

  15. Li, L., Zhao, J., Hou, L., Zhai, Y., Shi, J., Cui, F.: An attention-based deep learning model for clinical named entity recognition of Chinese electronic medical records. BMC Med. Inform. Decis. Mak. 19(5), 1–11 (2019)

    Google Scholar 

  16. Zhang, Y., Yang, J.: Chinese NER using lattice LSTM. In: Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), pp. 1554–1564 (2018)

    Google Scholar 

  17. Qiu, X., Sun, T., Xu, Y., Shao, Y., Dai, N., Huang, X.: Pre-trained models for natural language processing: a survey. Science China Technol. Sci. 63(10), 1872–1897 (2020). https://doi.org/10.1007/s11431-020-1647-3

    Article  Google Scholar 

  18. Zhang, X., et al.: Extracting comprehensive clinical information for breast cancer using deep learning methods. Int. J. Med. Inform. 132, 103985 (2019)

    Article  Google Scholar 

  19. Liu, W., Fu, X., Zhang, Y., Xiao, W.: Lexicon enhanced Chinese sequence labeling using BERT adapter. In: Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing (Volume 1: Long Papers), pp. 5847–5858 (2021)

    Google Scholar 

  20. Gui, T., Ma, R., Zhang, Q., Zhao, L., Jiang, Y.G., Huang, X.: CNN-based Chinese NER with lexicon rethinking. In: IJCAI, pp. 4982–4988 (2019)

    Google Scholar 

  21. Gui, T., et al.: A lexicon-based graph neural network for Chinese NER. In: Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing (EMNLP-IJCNLP), pp. 1040–1050 (2019)

    Google Scholar 

  22. Devlin, J., Chang, M.-W., Lee, K., Toutanova, K.: BERT: pre-training of deep bidirectional transformers for language understanding. In: Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers), pp. 4171–4186 (2019)

    Google Scholar 

  23. Lee, K., He, L., Lewis, M., Zettlemoyer, L.: End-to-end neural coreference resolution. In Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, pp. 188–197 (2017)

    Google Scholar 

  24. Eberts, M., Ulges, A.: Span-based joint entity and relation extraction with transformer pre-training. In ECAI 2020, 2006–2013 (2020)

    Google Scholar 

  25. Sui, D., Chen, Y., Liu, K., Zhao, J., Zeng, X., Liu, S.: Joint entity and relation extraction with set prediction networks. In: AAAI (2021)

    Google Scholar 

  26. Lafferty, J., McCallum, A., Pereira, F.C.: Conditional random fields: probabilistic models for segmenting and labeling sequence data. In: Proceedings of ICML, vol. 3(2), pp. 282–289 (2001).

    Google Scholar 

  27. Chen, X., Qiu, X., Zhu, C., Liu, P., Huang, X.J.: Long short-term memory neural networks for Chinese word segmentation. In: Proceedings of the 2015 Conference on Empirical Methods in Natural Language Processing, pp. 1197–1206 (2015)

    Google Scholar 

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Acknowledgements

The work is supported by grants from National Natural Science Foundation of China (No. 61871141), Natural Science Foundation of Guangdong Province (2021A1515011339), Presidential Foundation of China National Institute of Standardization (522022Y-9406), and Collaborative Innovation Team of Guangzhou University of Traditional Chinese Medicine (No. 2021XK08).

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Correspondence to Tianyong Hao .

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Mo, D., Huang, B., Wang, H., Cao, X., Weng, H., Hao, T. (2022). A Span-Based Joint Model for Measurable Quantitative Information Extraction. In: Zhang, H., et al. Neural Computing for Advanced Applications. NCAA 2022. Communications in Computer and Information Science, vol 1638. Springer, Singapore. https://doi.org/10.1007/978-981-19-6135-9_26

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  • DOI: https://doi.org/10.1007/978-981-19-6135-9_26

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  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-19-6134-2

  • Online ISBN: 978-981-19-6135-9

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