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Multi-task Question Generation Based Data Augmentation for Biomedical Answer Generation

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Advanced Intelligent Computing Technology and Applications (ICIC 2023)

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Abstract

Limited by the corpus size and the annotation cost, biomedical question answering (BioQA) is a task of great research value. To generate professional biomedical answers, we first propose a text-to-text multi-task question generation model, which improves the accuracy of domain question generation with two auxiliary tasks. Based on this, a multi-task QA pipeline system with filtering is designed to synthesize high-quality biomedical data. Then, we use three data augmentation strategies to conduct generative BioQA experiments on original and synthetic data. The results on the factoid BioASQ 7b, 8b, and 9b datasets demonstrate the effectiveness of our method.

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Notes

  1. 1.

    https://huggingface.co/transformers/.

  2. 2.

    https://github.com/Maluuba/nlg-eval.

References

  1. Alberti, C., Andor, D., Pitler, E., Devlin, J., Collins, M.: Synthetic QA corpora generation with roundtrip consistency. In: Proceedings of the 57th Conference of the Association for Computational Linguistics, pp. 6168–6173 (2019)

    Google Scholar 

  2. Chen, W., Verga, P., de Jong, M., Wieting, J., Cohen, W.W.: Augmenting pre-trained language models with QA-memory for open-domain question answering. CoRR abs/2204.04581 (2022)

    Google Scholar 

  3. Du, X., Shao, J., Cardie, C.: Learning to ask: neural question generation for reading comprehension. In: Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, pp. 1342–1352 (2017)

    Google Scholar 

  4. Feng, S.Y., et al.: A survey of data augmentation approaches for NLP. In: Findings of the Association for Computational Linguistics: ACL/IJCNLP, pp. 968–988 (2021)

    Google Scholar 

  5. Fu, Y., Ou, W., Yu, Z., Lin, Y.: MIGA: a unified multi-task generation framework for conversational text-to-SQL. CoRR abs/2212.09278 (2022)

    Google Scholar 

  6. Gu, Y., et al.: Domain-specific language model pretraining for biomedical natural language processing. ACM Trans. Comput. Healthc. 3(1), 2:1–2:23 (2022)

    Google Scholar 

  7. Heilman, M., Smith, N.A.: Good question! Statistical ranking for question generation. In: Proceedings of the 2010 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, pp. 609–617 (2010)

    Google Scholar 

  8. Jin, Q., et al.: Biomedical question answering: a survey of approaches and challenges. ACM Comput. Surv. 55(2), 35:1–35:36 (2023)

    Google Scholar 

  9. Lewis, M., Fan, A.: Generative question answering: learning to answer the whole question. In: Proceedings of the 7th International Conference on Learning Representations (2019)

    Google Scholar 

  10. Lewis, M., et al.: BART: denoising sequence-to-sequence pre-training for natural language generation, translation, and comprehension. In: Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, pp. 7871–7880 (2020)

    Google Scholar 

  11. Lewis, P.S.H., et al.: PAQ: 65 million probably-asked questions and what you can do with them. Trans. Assoc. Comput. Linguist. 9, 1098–1115 (2021)

    Article  Google Scholar 

  12. Lyu, C., Shang, L., Graham, Y., Foster, J., Jiang, X., Liu, Q.: Improving unsupervised question answering via summarization-informed question generation. In: Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, pp. 4134–4148 (2021)

    Google Scholar 

  13. Raffel, C., et al.: Exploring the limits of transfer learning with a unified text-to-text transformer. J. Mach. Learn. Res. 21, 140:1–140:67 (2020)

    Google Scholar 

  14. Rajpurkar, P., Zhang, J., Lopyrev, K., Liang, P.: SQuAD: 100, 000+ questions for machine comprehension of text. In: Proceedings of the 2016 Conference on Empirical Methods in Natural Language Processing, pp. 2383–2392 (2016)

    Google Scholar 

  15. Tsatsaronis, G., et al.: An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition. BMC Bioinform. 16, 138:1–138:28 (2015)

    Google Scholar 

  16. Wei, J.W., Zou, K.: EDA: easy data augmentation techniques for boosting performance on text classification tasks. In: Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing, pp. 6381–6387 (2019)

    Google Scholar 

  17. Yang, W., Xie, Y., Tan, L., Xiong, K., Li, M., Lin, J.: Data augmentation for BERT fine-tuning in open-domain question answering. CoRR abs/1904.06652 (2019)

    Google Scholar 

  18. Yoon, W., Lee, J., Kim, D., Jeong, M., Kang, J.: Pre-trained language model for biomedical question answering. In: Cellier, P., Driessens, K. (eds.) ECML PKDD 2019. CCIS, vol. 1168, pp. 727–740. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-43887-6_64

    Chapter  Google Scholar 

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Acknowledgment

This work was partially supported by the National Natural Science Foundation of China (No. 61977002).

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Correspondence to Wenge Rong .

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Zhao, J., Bai, J., Rong, W., Ouyang, Y., Xiong, Z. (2023). Multi-task Question Generation Based Data Augmentation for Biomedical Answer Generation. In: Huang, DS., Premaratne, P., Jin, B., Qu, B., Jo, KH., Hussain, A. (eds) Advanced Intelligent Computing Technology and Applications. ICIC 2023. Lecture Notes in Computer Science, vol 14088. Springer, Singapore. https://doi.org/10.1007/978-981-99-4749-2_41

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  • DOI: https://doi.org/10.1007/978-981-99-4749-2_41

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  • Online ISBN: 978-981-99-4749-2

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