Abstract
The fields of biology, ecology, and fisheries management are witnessing a growing demand for distinguishing individual fish. In recent years, deep learning methods have emerged as a promising tool for image-based fish recognition. Our study is focused on the re-identification of masu salmon from Japan, wherein fish were individually marked and photographed to evaluate discriminative body characteristics. Unlike previous studies where fish were sampled during the same time period, we evaluated individual re-identification across seasons and years to address challenges due to aging, seasonal variation, and other factors. In this paper, we propose a new contrastive learning framework called Aging Contrast (AgCo) and evaluate its performance on the masu salmon dataset. Our analysis indicates that, unlike large changes in body size over time, the pattern of parr marks on the lateral line of the fish body remains relatively stable, despite some change in coloration across seasons. AgCo accounts for such seasonally-invariant features and performs re-identification based on the cosine similarity of these features. Extensive experiments show that our AgCo method outperforms other state-of-the-art methods.
W. Shi and Z. Zhou—Contributed equally to this work.
The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the opinions or policies of the U.S. Geological Survey. Mention of trade names or commercial products does not constitute their endorsement by the U.S. Geological Survey.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Al-Jubouri, Q., Al-Azawi, R., Al-Taee, M., Young, I.: Efficient individual identification of zebrafish using hue/saturation/value color model. Egypt. J. Aquat. Res. 44(4), 271–277 (2018)
Alsmadi, M.K., Omar, K.B., Noah, S.A., Almarashdeh, I.: Fish recognition based on robust features extraction from size and shape measurements using neural network. J. Comput. Sci. 6(10), 1088 (2010)
Bekkozhayeva, D., Cisar, P.: Image-based automatic individual identification of fish without obvious patterns on the body (scale pattern). Appl. Sci. 12(11), 5401 (2022)
Bekkozhayeva, D., Saberioon, M., Cisar, P.: Automatic individual non-invasive photo-identification of fish (sumatra barb puntigrus tetrazona) using visible patterns on a body. Aquacult. Int. 29(4), 1481–1493 (2021)
Caron, M., Misra, I., Mairal, J., Goyal, P., Bojanowski, P., Joulin, A.: Unsupervised learning of visual features by contrasting cluster assignments. Adv. Neural. Inf. Process. Syst. 33, 9912–9924 (2020)
Chen, P., et al.: A study on giant panda recognition based on images of a large proportion of captive pandas. Ecol. Evol. 10(7), 3561–3573 (2020)
Chen, T., Kornblith, S., Norouzi, M., Hinton, G.: A simple framework for contrastive learning of visual representations. In: International Conference on Machine Learning, pp. 1597–1607. PMLR (2020)
Chen, T., Kornblith, S., Swersky, K., Norouzi, M., Hinton, G.E.: Big self-supervised models are strong semi-supervised learners. Adv. Neural. Inf. Process. Syst. 33, 22243–22255 (2020)
Chen, X., He, K.: Exploring simple siamese representation learning. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 15750–15758 (2021)
Cisar, P., Bekkozhayeva, D., Movchan, O., Saberioon, M., Schraml, R.: Computer vision based individual fish identification using skin dot pattern. Sci. Rep. 11(1), 1–12 (2021)
Delcourt, J., et al.: Individual identification and marking techniques for zebrafish. Rev. Fish Biol. Fish. 28(4), 839–864 (2018). https://doi.org/10.1007/s11160-018-9537-y
Ding, G., et al.: Fish recognition using convolutional neural network. In: OCEANS 2017-Anchorage, pp. 1–4. IEEE (2017)
Ding, R., Wang, L., Zhang, Q., Niu, Z., Zheng, N., Hud, G.: Fine-grained giant panda identification. In: ICASSP 2020–2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 2108–2112. IEEE (2020)
Food, Organization, A.: The state of world fisheries and aquaculture. Technical report, Food and Agriculture Organization of the United Nations (2022)
Futamura, R., et al.: Size-dependent growth tactics of a partially migratory fish before migration. Oecologia 198, 371–379 (2022)
He, K., Fan, H., Wu, Y., Xie, S., Girshick, R.: Momentum contrast for unsupervised visual representation learning. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 9729–9738 (2020)
He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)
Hirsch, P.E., Eckmann, R.: Individual identification of Eurasian perch perca fluviatilis by means of their stripe patterns. Limnologica 54, 1–4 (2015)
Hou, J., et al.: Identification of animal individuals using deep learning: a case study of giant panda. Biol. Cons. 242, 108414 (2020)
Hridayami, P., Putra, I.K.G.D., Wibawa, K.S.: Fish species recognition using vgg16 deep convolutional neural network. J. Comput. Sci. Eng. 13(3), 124–130 (2019)
Huntingford, F., Borçato, F., Mesquita, F.: Identifying individual common carp cyprinus carpio using scale pattern. J. Fish Biol. 83(5), 1453–1458 (2013)
Kalantidis, Y., Sariyildiz, M.B., Pion, N., Weinzaepfel, P., Larlus, D.: Hard negative mixing for contrastive learning. Adv. Neural. Inf. Process. Syst. 33, 21798–21809 (2020)
Kanno, Y., Harris, A., Kishida, O., Utumi, S., Uno, H.: Complex effects of body length and condition on within-tributary movement and emigration in stream salmonids. Ecol. Freshw. Fish 31, 317–329 (2021)
Li, J., Zhou, P., Xiong, C., Hoi, S.C.: Prototypical contrastive learning of unsupervised representations. arXiv preprint arXiv:2005.04966 (2020)
Li, W., Ji, Z., Wang, L., Sun, C., Yang, X.: Automatic individual identification of Holstein dairy cows using tailhead images. Comput. Electron. Agric. 142, 622–631 (2017)
Lin, T.Y., Dollár, P., Girshick, R., He, K., Hariharan, B., Belongie, S.: Feature pyramid networks for object detection. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 2117–2125 (2017)
Matkowski, W.M., Kong, A.W.K., Su, H., Chen, P., Hou, R., Zhang, Z.: Giant panda face recognition using small dataset. In: 2019 IEEE International Conference on Image Processing (ICIP), pp. 1680–1684. IEEE (2019)
McInnes, M.G., Burns, N.M., Hopkins, C.R., Henderson, G.P., McNeill, D.C., Bailey, D.M.: A new model study species: high accuracy of discrimination between individual freckled hawkfish (paracirrhites forsteri) using natural markings. J. Fish Biol. 96(3), 831–834 (2020)
Morgado-Santos, M., Matos, I., Vicente, L., Collares-Pereira, M.: Scaleprinting: individual identification based on scale patterns. J. Fish Biol. 76(5), 1228–1232 (2010)
Navarro, J., Perezgrueso, A., BarrĂa, C., Coll, M.: Photo-identification as a tool to study small-spotted catshark scyliorhinus canicula. J. Fish Biol. 92(5), 1657–1662 (2018)
Oord, A.V.d., Li, Y., Vinyals, O.: Representation learning with contrastive predictive coding. arXiv preprint arXiv:1807.03748 (2018)
Sandford, M., Castillo, G., Hung, T.C.: A review of fish identification methods applied on small fish. Rev. Aquac. 12(2), 542–554 (2020)
Stien, L.H., et al.: Consistent melanophore spot patterns allow long-term individual recognition of Atlantic salmon salmo salar. J. Fish Biol. 91(6), 1699–1712 (2017)
Sun, X., Shi, J., Dong, J., Wang, X.: Fish recognition from low-resolution underwater images. In: 2016 9th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI), pp. 471–476. IEEE (2016)
Whooley, P., Berrow, S., Barnes, C.: Photo-identification of fin whales (balaenoptera physalus L.) off the south coast of Ireland. Mar. Biodivers. Rec. 4 (2011)
Zhang, H., Cisse, M., Dauphin, Y.N., Lopez-Paz, D.: mixup: beyond empirical risk minimization. In: International Conference on Learning Representations (2018)
Zhou, Z., Hitt, N.P., Letcher, B.H., Shi, W., Li, S.: Pigmentation-based visual learning for salvelinus fontinalis individual re-identification. In: 2022 IEEE International Conference on Big Data (Big Data), pp. 6850–6852. IEEE (2022)
Acknowledgement
This material is based upon work supported by the U.S. Geological Survey under Grant/Cooperative Agreement No. G22AC00372.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
1 Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
Copyright information
© 2024 The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.
About this paper
Cite this paper
Shi, W. et al. (2024). Aging Contrast: A Contrastive Learning Framework for Fish Re-identification Across Seasons and Years. In: Liu, T., Webb, G., Yue, L., Wang, D. (eds) AI 2023: Advances in Artificial Intelligence. AI 2023. Lecture Notes in Computer Science(), vol 14471. Springer, Singapore. https://doi.org/10.1007/978-981-99-8388-9_21
Download citation
DOI: https://doi.org/10.1007/978-981-99-8388-9_21
Published:
Publisher Name: Springer, Singapore
Print ISBN: 978-981-99-8387-2
Online ISBN: 978-981-99-8388-9
eBook Packages: Computer ScienceComputer Science (R0)