Skip to main content
Log in

Pattern recognition display methods for the analysis of computed molecular properties

  • Research Papers
  • Published:
Journal of Computer-Aided Molecular Design Aims and scope Submit manuscript

    We’re sorry, something doesn't seem to be working properly.

    Please try refreshing the page. If that doesn't work, please contact support so we can address the problem.

Summary

Pattern recognition methods, particularly the ‘unsupervised learning’ techniques, are well suited for the preliminary analysis of the large data sets produced by computer chemistry. The use of linear and non-linear display methods for such exploratory analysis are exemplified with the aid of two data sets of biologically active molecules. Advantages and disadvantages of these techniques are discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Buckley, S., Ford, M.G., Leake, L.D., Salt, D.W., Burt, P.E., Moss, M.D.V., Brealey, C.J. and Livingstone, D.J., In Hadzi, D. and Jerman-Blazic, B. (Eds.) QSAR in Drug Design and Toxicology (Pharmacochemistry Library, Vol. 10), Elsevier, Amsterdam, 1987, pp. 336–339.

    Google Scholar 

  2. Martin, Y.C., Holland, J.B., Jarboe, C.M. and Plotnikoff, N., J. Med. Chem., 17 (1974) 409–413.

    Google Scholar 

  3. Topliss, J.G. and Edwards, R.P., J. Med. Chem., 22 (1979) 1238–44.

    Google Scholar 

  4. Livingstone, D.J. and Rahr, E., Quant. Struct.-Act. Relatsh., (1989) in press.

  5. Sharaf, M.A., Illman, D.A. and Kowalski, B.R., Chemometrics, Wiley, New York, 1986, pp. 179–295.

    Google Scholar 

  6. CNDO, program No. 91, QCPE, Bloomington, IN.

  7. MOPAC, program No. 455, QCPE, Bloomington, IN.

  8. Glen, R.C. and Rose, V.S., J. Mol. Graph., 5 (1987) 79–86.

    Google Scholar 

  9. RS/1, Data Handling Software, BBN Software Products UK Ltd., Staines, Middlesex.

  10. Infometrix Inc., Seattle, WA.

  11. SYBYL, Tripos Associates, St. Louis, MO.

  12. CLOGP, Medchem Software V. 3.51, April 1987, Pomona College Medicinal Chemistry Project, Pomona College, Claremont, CA.

    Google Scholar 

  13. Seal, H., Multivariate Statistical Analysis for Biologists, Methuen, London, 1968, pp. 101–122.

    Google Scholar 

  14. Chatfield, C. and Collins, A.J., Introduction to Multivariate Analysis, Chapman & Hall, London, 1980, pp. 57–79.

    Google Scholar 

  15. Kowalski, B.R. and Bender, C.F., Pattern Recognition, 8 (1976) 1–4.

    Google Scholar 

  16. Kowalski, B.R. and Bender, C.F., J. Am. Chem. Soc., 94 (1972) 5632–5639.

    Google Scholar 

  17. Sammon, J.W., IEEE Trans. Comput., C-18, (1969) 401–409.

    Google Scholar 

  18. Kowalski, B.R. and Bender, C.F., J. Am. Chem. Soc., 95 (1973) 686–693.

    Google Scholar 

  19. Abe, H., Kumazawa, S., Taji, T. and Sasaki, S., Biomed. Mass Spectrometry, 3 (1976) 151–154.

    Google Scholar 

  20. Court, J.P., Murgatroyd, R.C., Livingstone, D.J. and Rahr, E., Mol. Biochem. Parasitol., 27 (1988) 101–108.

    Google Scholar 

  21. Hyde, R.M. and Livingstone, D.J., J. Comput.-Aided Mol. Design, 2 (1988) 145–155.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Hudson, B., Livingstone, D.J. & Rahr, E. Pattern recognition display methods for the analysis of computed molecular properties. J Computer-Aided Mol Des 3, 55–65 (1989). https://doi.org/10.1007/BF01590995

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF01590995

Key words