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Parallel PDB data retriever “PDB diving booster”

  • VII Poster Session Papers
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High Performance Computing (ISHPC 1997)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 1336))

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Abstract

A powerful PDB-data-retrieval system “PDB Diving Booster,” which is a collection of functions/methods for data-retrieval and datatransmission, will enhances high-performance parallel-distributed programming in the field of structural biology. This system provides with 1) functions for reading whatever irregular data in PDB file, 2) methods to access and calculate elementary data in the structured object representing a protein structure, and 3) powerful data-transmission functions/methods for a parallel distributed environment. High performance parallel analysis of protein structures is realized only by writing a simple and short program in C++ and linking over libraries.

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References

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Author information

Authors and Affiliations

  1. Parallel Application TRC Lab., Real World Computing Partnership, Tsukuba Mitsui Building 17F, 3005, Tsukuba-shi Ibaraki, Japan

    Kentaro Onizuka, Tamotsu Noguchi, Minoru Saito & Yutaka Akiyama

Authors
  1. Kentaro Onizuka
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  2. Tamotsu Noguchi
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  3. Minoru Saito
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  4. Yutaka Akiyama
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Editor information

Constantine Polychronopoulos Kazuki Joe Keijiro Araki Makoto Amamiya

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© 1997 Springer-Verlag Berlin Heidelberg

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Onizuka, K., Noguchi, T., Saito, M., Akiyama, Y. (1997). Parallel PDB data retriever “PDB diving booster”. In: Polychronopoulos, C., Joe, K., Araki, K., Amamiya, M. (eds) High Performance Computing. ISHPC 1997. Lecture Notes in Computer Science, vol 1336. Springer, Berlin, Heidelberg. https://doi.org/10.1007/BFb0024234

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  • DOI: https://doi.org/10.1007/BFb0024234

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-63766-0

  • Online ISBN: 978-3-540-69644-5

  • eBook Packages: Springer Book Archive

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